Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p09
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0159 - 18619674-18619685,18619916-18619993,18620504-18620827     32   0.52 
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289...    28   6.4  
05_06_0206 + 26369089-26369143,26369627-26369733,26369814-263706...    28   6.4  
01_07_0205 - 41978437-41980599,41980805-41981215                       28   6.4  
10_01_0238 + 2496974-2497618,2497738-2497980,2498202-2499211,249...    28   8.5  
07_03_0458 + 18406844-18408877                                         28   8.5  
01_01_0102 + 769442-770159,770710-770805,771340-771363,771470-77...    28   8.5  

>05_04_0159 - 18619674-18619685,18619916-18619993,18620504-18620827
          Length = 137

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +3

Query: 144 IKMEENTVAVEKVVKQKSFPKNKFLFCITIVSIATLVGYIHYRYVSHLFENDRNFAYLSE 323
           ++   N +  + ++KQ S    +  F     +   L+G++HYR+V    E D    Y+ E
Sbjct: 30  VRQSSNAITTQNIMKQDS----RLEFTHEACNEDRLIGFVHYRFV---LEEDVPVVYVYE 82

Query: 324 LEREMS 341
           L+ E S
Sbjct: 83  LQMESS 88


>08_02_0747 -
           20728073-20728081,20728167-20728353,20728810-20728913,
           20729008-20729139,20729583-20729810,20730263-20730358,
           20730440-20730511,20730588-20730760,20730947-20731000,
           20731086-20731134,20731228-20731326,20731420-20731511,
           20731607-20731832,20731927-20732100,20732186-20732809,
           20732890-20733033,20733108-20733218,20733516-20733650,
           20733963-20733989
          Length = 911

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 174 EKVVKQKSFPKNKFLFCITIVSI 242
           EK++K + FP ++ L C  IVS+
Sbjct: 265 EKLIKNEEFPDDQILICFMIVSL 287


>05_06_0206 +
           26369089-26369143,26369627-26369733,26369814-26370647,
           26370781-26370939,26371070-26371410,26373894-26373991,
           26374244-26374350,26374715-26375266,26375366-26375524,
           26375631-26376005
          Length = 928

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 487 CILNRLNAFTSFGCSTLLSNINLDIPATNGFSW 389
           C+L RL+  T FGC+T L  I +  P  + F +
Sbjct: 248 CVLQRLSKLTVFGCTT-LQVIEIKAPNLSTFDY 279


>01_07_0205 - 41978437-41980599,41980805-41981215
          Length = 857

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 446 LHTLVEHQFRYPSYEWLL-MDQCFVIRVIETH 354
           L TL+  + +YP YEW +   +C  +RV++ H
Sbjct: 503 LRTLLSLEEQYPLYEWNVDFSKCKSLRVLDLH 534


>10_01_0238 +
           2496974-2497618,2497738-2497980,2498202-2499211,
           2499329-2499370,2499465-2499492
          Length = 655

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
 Frame = +3

Query: 291 ENDRNFAYLSE-----LEREMSFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDKSVEHPK 455
           +N+ N  Y +E     +    S +   G Y   YK ++ +  FVA    +  DK  E  K
Sbjct: 27  DNNHNITYFTEDDIKRITNNYSTKLGKGAYGEVYKGVIGDNRFVAVKKFIRVDKLDEFAK 86

Query: 456 EVNAFNRFNIHPEVL 500
           EV    + N H  V+
Sbjct: 87  EVIVHTQVN-HKNVV 100


>07_03_0458 + 18406844-18408877
          Length = 677

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/79 (24%), Positives = 31/79 (39%)
 Frame = +3

Query: 267 YRYVSHLFENDRNFAYLSELEREMSFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDKSVE 446
           Y     + E +R  A L E  R           +   K ++ +  F   ++K   D  V 
Sbjct: 306 YSLKRKMLEQERKIAELMEERRIAELTERRTVAFREIKAILQDIGFERLVTKEKIDSIVG 365

Query: 447 HPKEVNAFNRFNIHPEVLI 503
           +PK+V+    F+    VLI
Sbjct: 366 NPKQVSTSEAFSGKSSVLI 384


>01_01_0102 +
           769442-770159,770710-770805,771340-771363,771470-772542
          Length = 636

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = -1

Query: 414 SQLRMASHGPVFCNKSNRNPFRYGMTSPSLVQRGMQSSCHSQ 289
           S  R + HGP       R PFR     PS    GMQ SC  Q
Sbjct: 37  SSQRCSKHGPEI-----RYPFRLSTQPPSCGAPGMQLSCSGQ 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,330,541
Number of Sequences: 37544
Number of extensions: 349117
Number of successful extensions: 795
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)