Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p09
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...   162   3e-40
Z75953-1|CAB00098.1|  400|Caenorhabditis elegans Hypothetical pr...    33   0.15 
Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL032657-6|CAA21735.3|  139|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF088290-1|AAC98297.1|  139|Caenorhabditis elegans caspase-relat...    28   5.8  
U40415-9|AAK39249.3|  281|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score =  162 bits (393), Expect = 3e-40
 Identities = 72/164 (43%), Positives = 114/164 (69%), Gaps = 2/164 (1%)
 Frame = +3

Query: 228 TIVSIATLVGYIHYRYVSHLFENDRNFAYLSELEREMSFRTEMGFYYSYYKTLVHEKPFV 407
           ++V I  LVGYI+Y++V  LFEND++F++L++ EREM++RTEMG YYSYYKT+++   F+
Sbjct: 30  SVVIIGLLVGYINYQHVYTLFENDKHFSHLADFEREMAYRTEMGLYYSYYKTIINAPSFL 89

Query: 408 AGISKLMFDKSVEHPKEVNAFNRFNIHPEVLIAALYRYFEVWLNTT--EHRQCHIIDRGH 581
            G+ ++  D   EH  E+N  NRFN++PEV++A LYR F  +  +   +   C  ++RG 
Sbjct: 90  EGVQEITHDTVTEHGHEINTLNRFNLYPEVILAFLYRPFRAFAKSANWQIELCWQVNRG- 148

Query: 582 DLSPVESCVGLGQPIYFYLEAIWLLAGLNVTALFLHATALSNSI 713
           +L PVESC G+G P YFY+  ++++AG   +++F     +S+SI
Sbjct: 149 ELRPVESCEGIGNPHYFYITGVFIVAGTVASSIFYLGVLVSDSI 192


>Z75953-1|CAB00098.1|  400|Caenorhabditis elegans Hypothetical
           protein F57F5.1 protein.
          Length = 400

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 29/91 (31%), Positives = 41/91 (45%)
 Frame = +3

Query: 333 EMSFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDKSVEHPKEVNAFNRFNIHPEVLIAAL 512
           + SF+ E+G Y+S Y   + +        +LM  K VE P+E   F     HPEV  AA+
Sbjct: 97  QTSFKAELGSYFSSYPDTIKK--------QLMGAKMVEIPEEYRVFEM--THPEVEDAAV 146

Query: 513 YRYFEVWLNTTEHRQCHIIDRGHDLSPVESC 605
              F+   + T    C  I +  D S   SC
Sbjct: 147 PDSFD---SRTAWPNCPSISKIRDQSSCGSC 174


>Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical
           protein F28G4.3 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = +3

Query: 273 YVSHLFENDRNFAYLSELEREMSFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDK--SVE 446
           +VS + EN  N A +S         T     YS   T ++ K   A    +   K  + E
Sbjct: 108 FVSAISENHLNQAMISIHSFYKLNPTGRYILYSLNLTELNIKTLKAKFKDIEIRKFNTDE 167

Query: 447 HPKEVNAFNRFNIHPEVLIAALYRYFEVW 533
           +PK VN ++ +   P ++  AL  +  +W
Sbjct: 168 YPKYVNNWSEYRFKPLIVAQALKEFPNIW 196


>Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical
           protein W09D12.1 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +3

Query: 303 NFAYLSELEREMSFRTEMGFYYSYYKTLVHEKPFVAGISKLMFDKSVEHP 452
           N   + +  +E +++++     S Y TL+HE   + G+    +  S+ HP
Sbjct: 191 NSHIILDKNQEWAYKSQAPMGISLYHTLLHEIGHILGLPHTFYRGSIMHP 240


>AL032657-6|CAA21735.3|  139|Caenorhabditis elegans Hypothetical
           protein Y47H9C.6 protein.
          Length = 139

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 620 ADLLLS*GHMVVSRFECDRIVFTC 691
           ADLL      VV ++E D++VF C
Sbjct: 93  ADLLTETNRRVVEKYEADKVVFVC 116


>AF088290-1|AAC98297.1|  139|Caenorhabditis elegans caspase-related
           protein 3 protein.
          Length = 139

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 620 ADLLLS*GHMVVSRFECDRIVFTC 691
           ADLL      VV ++E D++VF C
Sbjct: 93  ADLLTETNRRVVEKYEADKVVFVC 116


>U40415-9|AAK39249.3|  281|Caenorhabditis elegans Hypothetical
           protein K02G10.1 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 564 IIDRGHDLSPVESCVGLGQPIYFYLEAIWLLAGLNV 671
           ++ + H      +CVGLG   YF +   W   GL +
Sbjct: 154 VLRKDHHCFITGACVGLGNQRYFMVFLFWCAIGLTI 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,776,894
Number of Sequences: 27780
Number of extensions: 335481
Number of successful extensions: 824
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)