Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p08
         (336 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7R7T6 Cluster: Putative uncharacterized protein PY0749...    32   2.2  
UniRef50_Q7REV4 Cluster: Rhoptry protein; n=4; Plasmodium (Vinck...    31   3.8  
UniRef50_P52166 Cluster: Presenilin sel-12; n=2; Caenorhabditis|...    31   3.8  
UniRef50_A7JCA1 Cluster: Putative uncharacterized protein; n=10;...    31   5.1  
UniRef50_Q8ILM9 Cluster: Putative uncharacterized protein; n=1; ...    31   5.1  
UniRef50_Q54DT1 Cluster: ABC transporter A family protein; n=5; ...    31   5.1  
UniRef50_Q80RP5 Cluster: R-LORF4; n=19; Alphaherpesvirinae|Rep: ...    31   6.7  
UniRef50_Q4XEB3 Cluster: Putative uncharacterized protein; n=1; ...    30   8.9  

>UniRef50_Q7R7T6 Cluster: Putative uncharacterized protein PY07492;
           n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY07492 - Plasmodium yoelii yoelii
          Length = 229

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -3

Query: 259 LRTYVXHVXHAXASPSLCQALIAFAFVIITFYTKTKCX*VFRIFLFVLRRNFEILISXYN 80
           LRT   +V H   SPS+   +I    ++++ Y       VF+  LF+   + ++  + Y 
Sbjct: 152 LRTIADYVTHKVFSPSILSHIIPLGGIVVSCYIMAALVGVFKYILFIY-CSVKLFKAWYR 210

Query: 79  RACN 68
           + C+
Sbjct: 211 KQCD 214


>UniRef50_Q7REV4 Cluster: Rhoptry protein; n=4; Plasmodium
            (Vinckeia)|Rep: Rhoptry protein - Plasmodium yoelii
            yoelii
          Length = 1559

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +1

Query: 10   DRSTRNQICKVVNIFLNNKNCMLCCXKRLIFRNSF 114
            D +T N+I K++NI  NN N +L   ++++ +NSF
Sbjct: 996  DHNTYNKINKIINIKKNNINNILSICEQVLNKNSF 1030


>UniRef50_P52166 Cluster: Presenilin sel-12; n=2;
           Caenorhabditis|Rep: Presenilin sel-12 - Caenorhabditis
           elegans
          Length = 444

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 241 HVXHAXASPSLCQALIAFAFVIITFYTK 158
           HV H     SLC AL+ F    ITFY++
Sbjct: 49  HVIHLFVPVSLCMALVVFTMNTITFYSQ 76


>UniRef50_A7JCA1 Cluster: Putative uncharacterized protein; n=10;
           Francisella tularensis|Rep: Putative uncharacterized
           protein - Francisella tularensis subsp. tularensis
           FSC033
          Length = 207

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 4   NFDRSTRNQICKVVNIFLNNKNCMLCCXKRLIFRNSFSKQIEKF 135
           N D S  ++   ++N FLNN +  +   ++ +FR++F ++I  F
Sbjct: 106 NLDVSVFDRYQNLINAFLNNNDMQISQQQQSLFRDTFYEKINSF 149


>UniRef50_Q8ILM9 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1630

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 1   KNFDRSTRNQICKVVNIFLNNKNCMLCCXKRLIFRNSFSKQIE 129
           KN+D+ ++N++ + VN  +NN N  L      IF+N     IE
Sbjct: 472 KNYDKKSKNELFEKVNNEMNNMNTFLINSTYDIFKNKIYAFIE 514


>UniRef50_Q54DT1 Cluster: ABC transporter A family protein; n=5;
           Dictyostelium discoideum|Rep: ABC transporter A family
           protein - Dictyostelium discoideum AX4
          Length = 845

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 202 ALIAFAFVIITFYTKTKCX*VFRIFLFVLRRNFEILIS 89
           ++I F+F + TF+ KT+   +F  FL ++  N   ++S
Sbjct: 330 SMITFSFFLSTFFKKTRAASIFGYFLVIIAVNLNSILS 367


>UniRef50_Q80RP5 Cluster: R-LORF4; n=19; Alphaherpesvirinae|Rep:
           R-LORF4 - Gallid herpesvirus 1
          Length = 142

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 221 FSFFMSGAHSICFRYYHLL 165
           FS+   G HS+ F+YYHLL
Sbjct: 112 FSYTFKGPHSLVFQYYHLL 130


>UniRef50_Q4XEB3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 103

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 139 FRIFLFVLRRNFEILISXYNRACNFYYSE----KCSLLYKFDFELIYQNF 2
           FRI      + + IL   YN    FY +      C++++ FDF  IY+ F
Sbjct: 45  FRIIFTFFTKEYVILKIIYNFYLQFYINMYIQIMCNIIFSFDFITIYKQF 94


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,910,982
Number of Sequences: 1657284
Number of extensions: 3201607
Number of successful extensions: 6298
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6298
length of database: 575,637,011
effective HSP length: 87
effective length of database: 431,453,303
effective search space used: 10354879272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)