Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p08
         (336 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    25   0.21 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.21 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.21 
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    21   4.6  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    21   4.6  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    20   6.0  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 25.0 bits (52), Expect = 0.21
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 130 FLFVLRRNFEILISXYNRACNFYYSEKCS 44
           F F +  +  +L+S     C  YY ++CS
Sbjct: 162 FAFPINLSVPVLLSGLIAMCGMYYRDECS 190


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.21
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 130 FLFVLRRNFEILISXYNRACNFYYSEKCS 44
           F F +  +  +L+S     C  YY ++CS
Sbjct: 395 FAFPINLSVPVLLSGLIAMCGMYYRDECS 423


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.21
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 130 FLFVLRRNFEILISXYNRACNFYYSEKCS 44
           F F +  +  +L+S     C  YY ++CS
Sbjct: 395 FAFPINLSVPVLLSGLIAMCGMYYRDECS 423


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
          protein 12 protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 7  FDRSTRNQICKVVNIFLNNKNCML 78
          +D    NQI K   +  N  NC+L
Sbjct: 26 YDNIDLNQILKSDRLLKNYVNCLL 49


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
          protein protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 7  FDRSTRNQICKVVNIFLNNKNCML 78
          +D    NQI K   +  N  NC+L
Sbjct: 26 YDNIDLNQILKSDRLLKNYVNCLL 49


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 10  DRSTRNQICKVVNIFLNNKNCMLCCXKRLI 99
           D++    +CKV+   L+NK   +    RL+
Sbjct: 553 DKAKFEGLCKVMKSILDNKVEKVVVSNRLV 582


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,541
Number of Sequences: 336
Number of extensions: 985
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6579502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)