Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p08
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   3.1  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   4.1  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    24   5.4  

>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 221 FSFFMSGAHSICFRYY 174
           F FF+ GAHS C   Y
Sbjct: 438 FGFFLGGAHSYCRSVY 453


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 202 PDIKKEKXKHVXRXKRMSSSVAW 270
           PD+K++K K +   K  S+++ W
Sbjct: 651 PDVKQKKYKLIAMRKASSTAIKW 673


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 13   RSTRNQICKVVNIFLNNKNCMLCCXKRLIF 102
            + T ++ICKV  I   +  C+L C K   F
Sbjct: 973  KCTASRICKVREIASLSLTCLLDCSKMTTF 1002


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,046,101
Number of Sequences: 5004
Number of extensions: 14469
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)