Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p08
         (336 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    31   0.16 
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    31   0.16 
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    31   0.16 

>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 241 HVXHAXASPSLCQALIAFAFVIITFYTK 158
           HV H     SLC AL+ F    ITFY++
Sbjct: 49  HVIHLFVPVSLCMALVVFTMNTITFYSQ 76


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 241 HVXHAXASPSLCQALIAFAFVIITFYTK 158
           HV H     SLC AL+ F    ITFY++
Sbjct: 49  HVIHLFVPVSLCMALVVFTMNTITFYSQ 76


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 241 HVXHAXASPSLCQALIAFAFVIITFYTK 158
           HV H     SLC AL+ F    ITFY++
Sbjct: 49  HVIHLFVPVSLCMALVVFTMNTITFYSQ 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,973,136
Number of Sequences: 27780
Number of extensions: 85600
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)