Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p07
         (248 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   0.85 
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   1.5  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    19   6.0  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    19   7.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        19   7.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    19   7.9  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    19   7.9  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
          transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 0.85
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 59 GLVRTSSQHGPXSTSRS 9
          GL  +  QHGP S SR+
Sbjct: 18 GLKYSGQQHGPQSDSRN 34


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 95  PPNSFGGSILTPGLVRTSSQHGP 27
           P +   GS+  PG     S HGP
Sbjct: 136 PKHPDPGSLQVPGAPMMMSSHGP 158


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 19.4 bits (38), Expect = 6.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 216 LVRLSLSVHSRPLSHYC 166
           L  L++ V+ RP S YC
Sbjct: 345 LGELAVCVNERPWSLYC 361


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 19.0 bits (37), Expect = 7.9
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +1

Query: 58  PGVNMDPP 81
           PG+N++PP
Sbjct: 194 PGLNLNPP 201


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 19.0 bits (37), Expect = 7.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 213 PIQSDPFLLKKK 248
           P+ S+P +LK+K
Sbjct: 343 PLDSEPGMLKRK 354


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 19.0 bits (37), Expect = 7.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 197 ASTPGRYPTTARCG 156
           +S PG  PTTA  G
Sbjct: 748 SSFPGHGPTTAPMG 761


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 19.0 bits (37), Expect = 7.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 191 TPGRYPTTARCGDFW 147
           TP   P ++RCG  +
Sbjct: 292 TPRTTPASSRCGQLF 306


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,122
Number of Sequences: 336
Number of extensions: 1403
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  3737755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)