Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p07
         (248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   1.9  
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom...    24   2.6  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    24   3.4  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    23   5.9  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    23   5.9  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    23   5.9  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    23   7.8  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    23   7.8  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    23   7.8  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    23   7.8  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -1

Query: 134 PPGPVRPSLVN-LHPPNSFGGS 72
           PP PVRP++++ + PP S+  S
Sbjct: 139 PPPPVRPNVMSQMPPPPSYSSS 160


>SPBC29A3.08 |pof4||elongin-A, F-box protein
           Pof4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 186 RPLSHYCPMRGLLA 145
           RP+S+YCP   L+A
Sbjct: 139 RPMSNYCPKSSLMA 152


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 95   PPNSFGGSILTPGLVRTSSQHGPXSTSR 12
            P N  G   LT G    S++HGP STS+
Sbjct: 1067 PENLQGNVSLTVGYC--SAEHGPGSTSK 1092


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 75  PPEGVWGVQVN 107
           PPEGVW + VN
Sbjct: 554 PPEGVWKLLVN 564


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 191 TPGRYPTTARCGDFWLLGFPPGPVRPSLVNLHPPNSF 81
           +P R P+  R      L  P  P+ PS+  L PPN +
Sbjct: 219 SPARTPSPIRLYSSDALR-PQSPLSPSVEYLTPPNPY 254


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 128 GPVRPSLVNLHPPNSFGGSILTPG 57
           G V   L+N+   N   GS++ PG
Sbjct: 264 GEVHKGLINISTYNYLEGSVVVPG 287


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 116 PSLVNLHPPNSFGGSILTPGLVRTSS 39
           PS++N+HP  SF    L    +  SS
Sbjct: 341 PSVMNIHPLYSFSSKSLESSKLHYSS 366


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 64  VNMDPPKEFGGCRLTKEGRTGPGGKPSSQKSPHR 165
           +N+D P E    RL +  R GP  K     S  R
Sbjct: 234 LNLDSPAELKHRRLVRSQRNGPLDKDLKPNSKIR 267


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 100 RLTKEGRTGPGGKPSSQKSPHRAV 171
           +L  E RTG G      ++PH AV
Sbjct: 214 QLVAEHRTGMGASHVLHQNPHNAV 237


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 64  VNMDPPKEFGGCRLTKEGRTGPGGKPSSQKSP 159
           VN+  P E      T++   GP  KP +  +P
Sbjct: 169 VNIKYPMESSDSSSTEQQLVGPSSKPFASTTP 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,038,940
Number of Sequences: 5004
Number of extensions: 18841
Number of successful extensions: 40
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)