Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4p07
(248 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 29 0.52
03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265... 27 2.8
12_02_0822 + 23453715-23454209 26 3.7
12_01_0090 + 717524-719080 26 3.7
10_08_0628 + 19389508-19389637,19389774-19389850,19390332-193904... 26 3.7
02_05_0803 - 31842722-31843648 26 3.7
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 26 4.8
03_05_0625 - 26225201-26225879,26226706-26227553 26 4.8
01_01_0796 + 6190931-6192745 26 4.8
10_02_0056 - 4656268-4656804 25 6.4
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 25 6.4
06_03_0256 - 18841627-18841993,18842087-18842415,18842512-188427... 25 6.4
03_05_0533 - 25332015-25332145,25332231-25332449,25332595-253327... 25 6.4
01_01_0012 + 71903-72935,73468-73981,74619-76008 25 6.4
10_08_0062 + 14586613-14586966 25 8.5
09_04_0515 + 18238434-18238545,18238659-18238709,18238844-182388... 25 8.5
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 29.1 bits (62), Expect = 0.52
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 152 FWLLGFPPGPVRPSLVNL-HPPNSFGGSILTP 60
F LG PPGP++P N+ H P G + P
Sbjct: 520 FGPLGLPPGPMQPIGPNMSHSPGPLGPGVFIP 551
>03_05_0932 +
28924891-28924935,28925982-28926062,28926464-28926512,
28926599-28926677,28926762-28926921,28927307-28927440,
28927814-28927882,28928064-28928151,28928396-28928471,
28929267-28929340,28929478-28929585,28929858-28930160,
28930483-28930587,28930670-28930750,28930838-28931852,
28932086-28932201
Length = 860
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 137 FPPGPVRPSLVNLHPPNSFGGSILTPGLVRTSSQH 33
FPP P ++ L + +L+PG V SS H
Sbjct: 632 FPPAPTEQDVIVLSDSDDDNVMVLSPGDVNFSSAH 666
>12_02_0822 + 23453715-23454209
Length = 164
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 213 VRLSLSVHSRPLSHYCPMRGLLAAG 139
V+++++ H RPL +CP G G
Sbjct: 115 VKVTVTPHGRPLQGHCPAAGCRGGG 139
>12_01_0090 + 717524-719080
Length = 518
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 134 PPGPVRPSLVNLHPPNSFGGSILTPGLVRTSSQHGPXS 21
PP P SL+ PP S++ P +V SS P S
Sbjct: 47 PPSPSALSLLLEAPPAVLSPSLVCPVIVAFSSSQAPSS 84
>10_08_0628 +
19389508-19389637,19389774-19389850,19390332-19390438,
19390545-19390626,19390702-19390814,19391023-19391086,
19391192-19391266,19391691-19391807,19392131-19392199,
19392319-19392411,19392733-19392835,19393040-19393164,
19393317-19393366,19393477-19393543,19393663-19393742,
19394038-19394166,19394274-19394340,19394429-19394512
Length = 543
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 210 RLSLSVHSRPLSHYCPMR 157
R++L +++ P SHYCP R
Sbjct: 474 RVNLPLYAGPESHYCPAR 491
>02_05_0803 - 31842722-31843648
Length = 308
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 134 GNPAAKSPRIGQ*WDSGREWTLSDSLTNT 220
G P A +P +GQ W + + LS++ TN+
Sbjct: 76 GAPNAATPSVGQWWGTIEQLYLSNAATNS 104
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -1
Query: 143 LGFPPGPVRPSLVNLHPPNSFGGSILTPGLVRTSSQHGP 27
LG PP P P V + P +GG + PG P
Sbjct: 81 LGAPPPPPPPQQVQVQVPPQYGG-VPNPGYPMAQQMQPP 118
>03_05_0625 - 26225201-26225879,26226706-26227553
Length = 508
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 188 PGRYPTTARCGDFWLLGFPPGP--VRPSLVNLHPPNSFGGSILTP 60
PGR+ C LLG P P RP++V ++P + L P
Sbjct: 105 PGRHEIHDHCNGLLLLGGDPDPDTHRPAIVVVNPATRWCSPPLPP 149
>01_01_0796 + 6190931-6192745
Length = 604
Score = 25.8 bits (54), Expect = 4.8
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Frame = -1
Query: 197 ASTPGRYPTTARCGDFWLLGFPPGPVRPS----LVNLHPPNSFGGSILTPGLVRTSSQHG 30
A P P A G W+ PP PV S L+ L PP F G + P + +
Sbjct: 234 ADQPPPPPPPAAGGSLWIPELPPPPVEGSPWAGLLPLRPPR-FAG--MEPSFLESQQAPP 290
Query: 29 PXSTS 15
P S
Sbjct: 291 PAQVS 295
>10_02_0056 - 4656268-4656804
Length = 178
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Frame = -1
Query: 188 PGRYPTTARC----GDFWL-LGFPPGPVR 117
P +RC GDF+L LG PPGP+R
Sbjct: 143 PSNRSNQSRCYPSFGDFFLQLGEPPGPLR 171
>09_02_0322 -
7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 143 LGFPPGPVRPSLVNLHPPNSFGGS 72
LG PG P+ +L PP FG +
Sbjct: 677 LGLSPGSYNPASAHLVPPYKFGNA 700
>06_03_0256 -
18841627-18841993,18842087-18842415,18842512-18842749,
18844091-18844373,18844773-18844989,18845067-18845360
Length = 575
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 134 PPGPVRPSLVNLHPPNSFGGSILTPGLVRTSSQHGP 27
PP P PS + P SF ++ PG + + + GP
Sbjct: 191 PPPPPSPSQAS---PGSFASGMMLPGSLGSGAWQGP 223
>03_05_0533 -
25332015-25332145,25332231-25332449,25332595-25332754,
25332973-25333025,25334998-25335433
Length = 332
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 142 WVSPLARFAPP*LTCTPQTPSGGP 71
W+ P+ APP L P T SG P
Sbjct: 307 WLRPINASAPPDLRIVPLTYSGPP 330
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 134 PPGPVRPSLVNLHPPNSFGGSILTP 60
PPGPV PS + P GGS P
Sbjct: 80 PPGPVDPSKSSAAGPGIAGGSAGAP 104
>10_08_0062 + 14586613-14586966
Length = 117
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 85 EFGGCRLTKEGRTGPGGKPSSQKSPHR 165
E GGC +G G GG + + +P R
Sbjct: 54 EGGGCASAGDGAAGSGGGGAMEAAPRR 80
>09_04_0515 +
18238434-18238545,18238659-18238709,18238844-18238897,
18239727-18239777,18239845-18239895,18240056-18240210,
18240550-18240663,18240873-18240938,18241478-18241561,
18241640-18241726,18241975-18242066,18242163-18242223,
18242475-18242531,18243129-18243220,18243394-18243584,
18244203-18244321,18244518-18244589,18244699-18244784,
18244866-18244962,18245488-18245622
Length = 608
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -1
Query: 188 PGRYPTTARCGDFWLLGFPPGPVRPSLVNLHPPNS 84
PG YP +A G W P P R S + P S
Sbjct: 47 PGAYPRSAGRGRTWKRDSPEAPPRRSGITRVPNRS 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,076,396
Number of Sequences: 37544
Number of extensions: 181378
Number of successful extensions: 418
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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