Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4p07
(248 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK055096-1|BAB70854.1| 155|Homo sapiens protein ( Homo sapiens ... 29 2.1
BC041788-1|AAH41788.2| 371|Homo sapiens glutamate receptor, ion... 28 4.8
AL832320-1|CAD38615.1| 465|Homo sapiens hypothetical protein pr... 28 4.8
AJ277365-1|CAC10539.1| 796|Homo sapiens polyglutamine-containin... 28 4.8
AB058768-1|BAB47494.1| 723|Homo sapiens KIAA1865 protein protein. 28 4.8
X98654-1|CAA67224.1| 1244|Homo sapiens homologue of Drosphila re... 28 6.3
BC022230-1|AAH22230.1| 1243|Homo sapiens PITPNM1 protein protein. 28 6.3
AY429102-1|AAR06909.1| 1243|Homo sapiens phosphatidylinositol tr... 28 6.3
AK130286-1|BAC85321.1| 277|Homo sapiens protein ( Homo sapiens ... 28 6.3
AF334584-1|AAK01444.1| 1244|Homo sapiens NIR2 protein. 28 6.3
>AK055096-1|BAB70854.1| 155|Homo sapiens protein ( Homo sapiens
cDNA FLJ30534 fis, clone BRAWH2001141. ).
Length = 155
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 94 GCRLTKEGRTGPGGKPSSQKSPHRAVVG*RP 186
GCR+ + T PGG PSSQ P R + G P
Sbjct: 16 GCRVPRPPPT-PGGVPSSQLRPERLLPGESP 45
>BC041788-1|AAH41788.2| 371|Homo sapiens glutamate receptor,
ionotropic, N-methyl D-asparate-associated protein 1
(gluta protein.
Length = 371
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -1
Query: 140 GFPPGPVRPSLVNLHPPNSFGGSILTPGLVRTSSQHG 30
G+P GP P N PPN +G + PG S QHG
Sbjct: 98 GYPQGPY-PQ--NPFPPNPYGQPQVFPGQDPDSPQHG 131
>AL832320-1|CAD38615.1| 465|Homo sapiens hypothetical protein
protein.
Length = 465
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 197 ASTPGRYPTTARCGDFWLLGFPPGP-VRPSLVNLHPPN 87
AS PG+ +R GD L PP P P + +HP N
Sbjct: 333 ASVPGQRRLASRNGDLNLQVAPPPPSAHPGMDQVHPQN 370
>AJ277365-1|CAC10539.1| 796|Homo sapiens polyglutamine-containing
protein protein.
Length = 796
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 197 ASTPGRYPTTARCGDFWLLGFPPGP-VRPSLVNLHPPN 87
AS PG+ +R GD L PP P P + +HP N
Sbjct: 664 ASVPGQRRLASRNGDLNLQVAPPPPSAHPGMDQVHPQN 701
>AB058768-1|BAB47494.1| 723|Homo sapiens KIAA1865 protein protein.
Length = 723
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 197 ASTPGRYPTTARCGDFWLLGFPPGP-VRPSLVNLHPPN 87
AS PG+ +R GD L PP P P + +HP N
Sbjct: 591 ASVPGQRRLASRNGDLNLQVAPPPPSAHPGMDQVHPQN 628
>X98654-1|CAA67224.1| 1244|Homo sapiens homologue of Drosphila
retinal degeneration B gene protein.
Length = 1244
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = -1
Query: 197 ASTPGRYPTTARCGDFWLLGFPPGPVRPSLVNLHPPNSFGGSILTPGLVRTSSQHG 30
A PG+ T AR G P GP P + P SFG + SSQHG
Sbjct: 268 AQPPGKPSTEARSAAS-NTGTPDGPEAPPGPDASPDASFGKQWSSSSRSSYSSQHG 322
>BC022230-1|AAH22230.1| 1243|Homo sapiens PITPNM1 protein protein.
Length = 1243
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = -1
Query: 197 ASTPGRYPTTARCGDFWLLGFPPGPVRPSLVNLHPPNSFGGSILTPGLVRTSSQHG 30
A PG+ T AR G P GP P + P SFG + SSQHG
Sbjct: 268 AQPPGKPSTEARSAAS-NTGTPDGPEAPPGPDASPDASFGKQWSSSSRSSYSSQHG 322
>AY429102-1|AAR06909.1| 1243|Homo sapiens phosphatidylinositol
transfer protein membrane-associated 1 protein.
Length = 1243
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = -1
Query: 197 ASTPGRYPTTARCGDFWLLGFPPGPVRPSLVNLHPPNSFGGSILTPGLVRTSSQHG 30
A PG+ T AR G P GP P + P SFG + SSQHG
Sbjct: 268 AQPPGKPSTEARSAAS-NTGTPDGPEAPPGPDASPDASFGKQWSSSSRSSYSSQHG 322
>AK130286-1|BAC85321.1| 277|Homo sapiens protein ( Homo sapiens
cDNA FLJ26776 fis, clone PRS03665. ).
Length = 277
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = -1
Query: 191 TPGRYPTTARCGDFWLLGFPPGPVRPSLVNLHPP---NSFGGSILTP-GLVRTSSQH 33
+P PTTA WL P G + P + HPP ++ GS+ TP L T +H
Sbjct: 156 SPPPTPTTALSHPPWLSPTPHGSLPPPMALSHPPWLSSTPHGSLPTPTALSPTHPRH 212
>AF334584-1|AAK01444.1| 1244|Homo sapiens NIR2 protein.
Length = 1244
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = -1
Query: 197 ASTPGRYPTTARCGDFWLLGFPPGPVRPSLVNLHPPNSFGGSILTPGLVRTSSQHG 30
A PG+ T AR G P GP P + P SFG + SSQHG
Sbjct: 268 AQPPGKPSTEARSAAS-NTGTPDGPEAPPGPDASPDASFGKQWSSSSRSSYSSQHG 322
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,388,854
Number of Sequences: 237096
Number of extensions: 1050834
Number of successful extensions: 2550
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2548
length of database: 76,859,062
effective HSP length: 60
effective length of database: 62,633,302
effective search space used: 1377932644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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