Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4p07
(248 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 0.33
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 0.33
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 0.33
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 28 0.76
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 28 0.76
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 28 1.0
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 27 2.3
Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical pr... 26 3.1
AL032632-4|CAA21584.1| 469|Caenorhabditis elegans Hypothetical ... 26 3.1
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 26 4.1
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr... 26 4.1
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla... 25 5.4
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ... 25 5.4
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z49207-6|CAJ58500.1| 348|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z49207-5|CAA89070.1| 402|Caenorhabditis elegans Hypothetical pr... 25 7.1
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ... 25 7.1
AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 25 7.1
Z98877-9|CAB63405.1| 348|Caenorhabditis elegans Hypothetical pr... 25 9.4
U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen prote... 25 9.4
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 25 9.4
AC006776-2|AAF60627.1| 172|Caenorhabditis elegans Hypothetical ... 25 9.4
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.5 bits (63), Expect = 0.33
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +1
Query: 55 KPGVNMDPPKEFGGCRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVDA 198
KP V P C+ +G GP G P + P A RPG DA
Sbjct: 133 KPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 180
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.5 bits (63), Expect = 0.33
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +1
Query: 55 KPGVNMDPPKEFGGCRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVDA 198
KP V P C+ +G GP G P + P A RPG DA
Sbjct: 128 KPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 175
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.5 bits (63), Expect = 0.33
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +1
Query: 55 KPGVNMDPPKEFGGCRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVDA 198
KP V P C+ +G GP G P + P A RPG DA
Sbjct: 128 KPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 175
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 28.3 bits (60), Expect = 0.76
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 97 CRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVDA 198
C+ +G GP G P + P A RPG DA
Sbjct: 149 CKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 182
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +1
Query: 55 KPGVNMDPPKEFGGCRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGV 192
+P VN + GC L G GP G P P R +PGV
Sbjct: 89 QPEVNPSANLQCEGCCLP--GPPGPAGVPGKPGKPGRPGAPGQPGV 132
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 28.3 bits (60), Expect = 0.76
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 97 CRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVDA 198
C+ +G GP G P + P A RPG DA
Sbjct: 149 CKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 182
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +1
Query: 55 KPGVNMDPPKEFGGCRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGV 192
+P VN + GC L G GP G P P R +PGV
Sbjct: 89 QPEVNPSANLQCEGCCLP--GPPGPAGVPGKPGKPGRPGAPGQPGV 132
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 115 GRTGPGGKPSSQKSPHRAVVG*RPGVDAQ*QPN 213
G GP G+ + P +A RPGVDAQ Q N
Sbjct: 191 GPAGPKGQRGAPGHPGQAGSPGRPGVDAQSQSN 223
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 26.6 bits (56), Expect = 2.3
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +1
Query: 22 LXGPC*LDVRTKPGVNMDPPKEFGGCRLTKE-GRTGPGGKPSSQKSPHRAVVG*RPG 189
L G C +PG PP E G + + GR GP G P P G RPG
Sbjct: 138 LPGGCIQCPPGRPGPR-GPPGEVGPAGPSGDNGRKGPPGPPGGPGGPGEGGDGGRPG 193
>Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical
protein E03G2.4 protein.
Length = 333
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Frame = +1
Query: 49 RTKPGVNMD-----PPKEFGGCRLTKEGRTGPGGKPSSQKSP 159
R P N D PP E G R K+GR GP G+P P
Sbjct: 176 RATPAPNFDWCFDCPPGEPG--RQGKQGRKGPPGRPGGSGLP 215
>AL032632-4|CAA21584.1| 469|Caenorhabditis elegans Hypothetical
protein Y11D7A.8 protein.
Length = 469
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 131 PGPVRPSLVNLHPPNSFGGSILTPGL 54
P RPS+++L PN FG + + L
Sbjct: 68 PTSYRPSIISLQIPNEFGDDVSSDAL 93
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 115 GRTGPGGKPSSQKSPHRAVVG*RPGVDAQ 201
G GP G P + +P +A +PG DAQ
Sbjct: 186 GPAGPKGAPGAPGNPGQAGAPGQPGSDAQ 214
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 115 GRTGPGGKPSSQKSPHRAVVG*RPGVDAQ 201
G GP G P + +P +A +PG DAQ
Sbjct: 186 GPAGPKGAPGAPGNPGQAGAPGQPGSDAQ 214
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 115 GRTGPGGKPSSQKSPHRAVVG*RPGVDAQ 201
G GP G P + +P +A +PG DAQ
Sbjct: 186 GPAGPKGAPGAPGNPGQAGAPGQPGSDAQ 214
>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical
protein ZK430.1 protein.
Length = 1650
Score = 25.8 bits (54), Expect = 4.1
Identities = 8/22 (36%), Positives = 10/22 (45%)
Frame = +2
Query: 173 WDSGREWTLSDSLTNTIRPVPF 238
W +EW T T P+PF
Sbjct: 156 WKRSKEWQFMQQFTKTETPIPF 177
>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
protein 8 protein.
Length = 1206
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 143 LGFPPGPVRPSLVNLHPPN--SFGGSILTPGLVRTSSQHGPXSTSRS 9
LGF GPV ++V L+ P FG ++ + ++S+ G S +
Sbjct: 1078 LGFHTGPVAAAVVGLNAPRYCLFGDTVNMASRMESNSEPGKTQISET 1124
>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
guanyly cyclase protein.
Length = 1152
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 143 LGFPPGPVRPSLVNLHPPN--SFGGSILTPGLVRTSSQHGPXSTSRS 9
LGF GPV ++V L+ P FG ++ + ++S+ G S +
Sbjct: 1024 LGFHTGPVAAAVVGLNAPRYCLFGDTVNMASRMESNSEPGKTQISET 1070
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +1
Query: 91 GGCR-LTKEGRTGPGGKPSSQKSPHRAVVG*RPGVDAQ 201
GGC G GPGG+P +P + PG +
Sbjct: 111 GGCTGCCNPGPPGPGGRPGKPGTPGKPGAPGNPGASGK 148
>Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.1 protein.
Length = 306
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 115 GRTGPGGKPSSQKSPHRAVVG*RPGVDAQ 201
G GP G+P SQ P + RPG Q
Sbjct: 229 GAPGPAGQPGSQGEPGPSGPDGRPGQPGQ 257
>Z49207-6|CAJ58500.1| 348|Caenorhabditis elegans Hypothetical
protein R07E3.1b protein.
Length = 348
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 149 WLLGFPPGPVRPSLVNLHPPNSFGGSILTP 60
WL+ F GPV + + P ++ G + TP
Sbjct: 254 WLVNF--GPVNIGMAVIQPMRAYKGGVFTP 281
>Z49207-5|CAA89070.1| 402|Caenorhabditis elegans Hypothetical
protein R07E3.1a protein.
Length = 402
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 149 WLLGFPPGPVRPSLVNLHPPNSFGGSILTP 60
WL+ F GPV + + P ++ G + TP
Sbjct: 308 WLVNF--GPVNIGMAVIQPMRAYKGGVFTP 335
>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
protein Y54E2A.6 protein.
Length = 1798
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 213 VRLSLSVHSRPLSHYCPMRGLL 148
V +S+ + P HYCP GL+
Sbjct: 1157 VPISVHIQGFPGQHYCPRMGLM 1178
>AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical
protein Y41C4A.19 protein.
Length = 289
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 115 GRTGPGGKPSSQKSPHRAVVG*RPGVDAQ*Q 207
G GP G+ + P +A +PGVDAQ Q
Sbjct: 170 GPAGPKGQRGAPGHPGQAGAPGQPGVDAQSQ 200
>Z98877-9|CAB63405.1| 348|Caenorhabditis elegans Hypothetical
protein Y69H2.8 protein.
Length = 348
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 216 LVRLSLSVHSRPLSHYCPMRGLLAAG 139
L R ++V SR + YC M+ LAAG
Sbjct: 61 LGRCEITVASRCVCRYCRMQKCLAAG 86
>U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen protein
113 protein.
Length = 348
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 58 PGVNMDPPKEFGGCRLTKEGRTGPGGK--PSSQKSP 159
P V +DP K C G TGP G+ PS + P
Sbjct: 139 PPVTIDPTKGCRVCPNGPRGPTGPPGETGPSGPEGP 174
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 140 GFPPGPVRPSLVNLHPPNS 84
G PPGP P ++ L PP S
Sbjct: 617 GPPPGPDVPVMIALPPPKS 635
>AC006776-2|AAF60627.1| 172|Caenorhabditis elegans Hypothetical
protein Y46H3C.5 protein.
Length = 172
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 73 DPPKEFGGCRLTKEGRTGPGGKPSSQK 153
D E G CR ++ RT G P +QK
Sbjct: 30 DQVDEGGSCRKDRDERTMERGNPETQK 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,121,368
Number of Sequences: 27780
Number of extensions: 134417
Number of successful extensions: 437
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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