Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p06
         (766 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.7  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   6.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   6.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   6.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   6.2  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   6.2  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   8.2  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   8.2  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 395 EETEITMTSQINEWYKGRKVL 457
           E+ EIT     NE+Y+GRK L
Sbjct: 7   EKFEITDYDLNNEFYRGRKKL 27


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = -3

Query: 149 IGSRDLQYPVHNHE---TNKLNNIY 84
           I  + LQY  HNH+   +N L+N Y
Sbjct: 55  IQQQQLQYGYHNHQNYNSNVLSNGY 79


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = -3

Query: 149 IGSRDLQYPVHNHE---TNKLNNIY 84
           I  + LQY  HNH+   +N L+N Y
Sbjct: 55  IQQQQLQYGYHNHQNYNSNVLSNGY 79


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 86  IYCLVYLFRDCELDIEDRVSL 148
           +YC + +F  CEL IE   S+
Sbjct: 414 VYCSLAIFVLCELLIEGTTSI 434


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = -3

Query: 149 IGSRDLQYPVHNHE---TNKLNNIY 84
           I  + LQY  HNH+   +N L+N Y
Sbjct: 55  IQQQQLQYGYHNHQNYNSNVLSNGY 79


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = -3

Query: 149 IGSRDLQYPVHNHE---TNKLNNIY 84
           I  + LQY  HNH+   +N L+N Y
Sbjct: 55  IQQQQLQYGYHNHQNYNSNVLSNGY 79


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 32  LHISTLNLARDDFHFSLYIYCLVYLFRDCELDIED 136
           L ++TL L + D HF+     +V+LF     DI D
Sbjct: 9   LCLATLALGQKDPHFAADRNSIVHLFEWKWSDIAD 43


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 32  LHISTLNLARDDFHFSLYIYCLVYLFRDCELDIED 136
           L ++TL L + D HF+     +V+LF     DI D
Sbjct: 9   LCLATLALGQKDPHFAADRNSIVHLFEWKWSDIAD 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,875
Number of Sequences: 336
Number of extensions: 4025
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)