Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4p06
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 29 0.55
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 28 1.3
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 28 1.7
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 28 1.7
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 28 1.7
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 28 1.7
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 27 2.9
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 27 2.9
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 26 5.1
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 6.8
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 26 6.8
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S... 25 9.0
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 25 9.0
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 25 9.0
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 29.5 bits (63), Expect = 0.55
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -2
Query: 480 ISPEEPVIRTFRPLYHSFICDVIVISVSS 394
I+P+E ++R +PL + F+ D+ +S+SS
Sbjct: 317 IAPQEYMVRAPQPLVYVFLIDISFVSISS 345
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -2
Query: 630 ISELFRNLTGNFHMSSMRDSGLFP 559
++ F++ G+ H+S +R++GLFP
Sbjct: 1127 LTRAFKHENGDLHISDLRNTGLFP 1150
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = -2
Query: 528 PISGTLYSNFSIKTLPISPEEPVIRTFRPLYHSFICDVIVISVSSYHLYADDLQIYTQTS 349
P G Y++F+I + IS ++ + YHS I ++ S+ LYA +L ++ S
Sbjct: 432 PFEGGTYADFTI--IAIS----LLVQYTKDYHSEIAQMLCCSLCYLCLYAQNLNSHSSQS 485
Query: 348 LSEL 337
L EL
Sbjct: 486 LFEL 489
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 261 SPSIHANYSNGIILISHYSASSSRWSVLTKKF 356
+PSI A++SN +S +S SSS WS +F
Sbjct: 104 APSI-ASFSNSAADVSSHSRSSSSWSAKLSRF 134
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +2
Query: 50 NLARDDFHFSLYIYCLVYLFRDCELDIEDRVSLSLIGIGTPS---NKIAGSCDHFTFEHX 220
++ +D LYI L ++ L++EDR+ L+L+ + PS +K + S F
Sbjct: 2528 SVLKDSSFNILYIKYASLLLQELSLEVEDRLVLTLLQLLYPSSDVSKDSASLSKNAFADK 2587
Query: 221 LELP 232
E+P
Sbjct: 2588 FEIP 2591
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 245 CVFDGFTLNPCELLQRDNIDKSLFSVFIALVSSDKE 352
C+ GF +N C + DN+ S S F + DKE
Sbjct: 20 CLHKGFQINSCNIKAADNVLHSKASAFEKVNVVDKE 55
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +2
Query: 440 KGRKVLITGSSGLMGKVL 493
+GR VLITG++G +GKVL
Sbjct: 4 EGRVVLITGAAGGIGKVL 21
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 555 LDRTSAYTHPISGTLYSNFSIKTLPISPEEPVIRTFRPLYHSFIC 421
L+ T+P + FS+ LPISP I F L +F+C
Sbjct: 684 LETVHMLTNPDDAGSSNRFSMSVLPISPSLHSILRFLLLLLAFLC 728
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 413 MTSQINEWYKGRKVLITGSSGLMGKVLIEKLLYSVPDIGCVYALVRSKRGKSPESRIED 589
MTS + KG+ LITG SG +G + + + ++G +Y R+K+ + + D
Sbjct: 1 MTSMFS--LKGKTTLITGGSGGIGFSIAKAFAAAGSNVGLLYG--RNKKALEYAAELRD 55
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.8 bits (54), Expect = 6.8
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 207 LSSTILNCRQQ*PVSSTGS-PSIHANYSNGIILISHYSASSSRWSVL 344
+SST L VSST S PSI + S+ + S S SSS +S +
Sbjct: 131 VSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFTSLSSSGFSTV 177
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 6.8
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = -2
Query: 417 VIVISVSSYHLYADDLQIYTQTSLS---ELTNAMKTLNNDLSILSRWSNSHGLRVNPSKT 247
V + +VS +H A+ L ++ S S E+ +A + +S+ S H LR PSK
Sbjct: 488 VKMATVSEFH--ANALNLFGDVSASHLFEILSATALIEGRISVSSVLQYFHALRKTPSKE 545
Query: 246 QVIVV 232
+ V+
Sbjct: 546 IIAVL 550
>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 262 EPVEDTGHCCRQFKXVLESEMVAASGY 182
+P+E+ G CRQ K S+ AA GY
Sbjct: 255 QPLEEIGKICRQKKVFFHSD--AAQGY 279
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 306 LSILSR-WSNSHGLRVNPSKTQVIVVGSSRXC 214
L +++R W N+ + SKT++++VG++ C
Sbjct: 183 LQLIARTWMNTLKIASQASKTELLIVGTAYAC 214
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 443 GRKVLITGSSGLMGKVLIEKL 505
G V++TG S +G+V++EKL
Sbjct: 75 GMVVMVTGGSSGIGQVVVEKL 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,215
Number of Sequences: 5004
Number of extensions: 67444
Number of successful extensions: 208
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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