Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4p06
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099... 56 3e-08
08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130... 55 5e-08
09_06_0327 + 22359524-22359602,22359732-22359835,22362073-223622... 51 9e-07
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527... 50 2e-06
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576... 48 1e-05
04_03_0539 + 16892822-16892900,16894004-16894107,16894718-168949... 48 1e-05
04_03_0545 + 16996340-16996418,16998039-16998142,16999796-169999... 47 1e-05
07_03_0076 - 13123676-13123720,13124611-13124714,13124813-13124891 43 2e-04
09_04_0592 - 18823706-18823856,18823979-18824171,18824329-188244... 31 0.76
01_01_0960 + 7546081-7546161,7546439-7546537,7546650-7546706,754... 31 1.0
11_01_0475 - 3669734-3671452 29 4.1
08_01_0083 - 604175-605776 28 9.4
06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245 28 9.4
04_01_0526 - 6901003-6901056,6901070-6901404,6901423-6901607,690... 28 9.4
02_01_0510 + 3703715-3705040 28 9.4
>08_02_0085 +
12108474-12108552,12108656-12108759,12109726-12109925,
12110003-12110103,12110184-12110379,12110584-12110745,
12110856-12110937,12111741-12112004,12113047-12113174,
12113795-12113957
Length = 492
Score = 56.0 bits (129), Expect = 3e-08
Identities = 24/52 (46%), Positives = 38/52 (73%)
Frame = +2
Query: 434 WYKGRKVLITGSSGLMGKVLIEKLLYSVPDIGCVYALVRSKRGKSPESRIED 589
+++GR +LITGS+G +GKVL+EK+L PD+ +Y LVR+ +S R++D
Sbjct: 9 FFRGRSILITGSTGFLGKVLVEKILRVQPDVKKLYLLVRANDVESATRRVQD 60
>08_02_1566 +
27909297-27909390,27909542-27909645,27912899-27913098,
27913214-27913314,27913427-27914130,27914671-27914834,
27914941-27915100
Length = 508
Score = 55.2 bits (127), Expect = 5e-08
Identities = 23/55 (41%), Positives = 39/55 (70%)
Frame = +2
Query: 422 QINEWYKGRKVLITGSSGLMGKVLIEKLLYSVPDIGCVYALVRSKRGKSPESRIE 586
+I E++KG+ +LITG++G +GK+L+EK+L PD+ +Y LVR+ S R++
Sbjct: 10 RIIEYFKGKSILITGATGFLGKILVEKILRVQPDVKKIYLLVRAIDQASANQRVQ 64
>09_06_0327 +
22359524-22359602,22359732-22359835,22362073-22362272,
22362359-22362459,22362551-22363005,22363079-22363645
Length = 501
Score = 51.2 bits (117), Expect = 9e-07
Identities = 21/56 (37%), Positives = 39/56 (69%)
Frame = +2
Query: 419 SQINEWYKGRKVLITGSSGLMGKVLIEKLLYSVPDIGCVYALVRSKRGKSPESRIE 586
++I E++K + +LITGS+G +GK+L+EK+L PD+ +Y VR+ + + R++
Sbjct: 4 ARIIEYFKNKSILITGSTGFLGKILVEKILRVQPDVRKIYLPVRAVDAATAKQRMQ 59
>07_03_0423 +
18035688-18036572,18036659-18036978,18052618-18052724,
18053001-18053104,18054129-18054328,18054422-18054522,
18054695-18054841,18055007-18055166,18055287-18055368,
18056070-18056336,18056846-18056973,18057513-18057672
Length = 886
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/50 (40%), Positives = 34/50 (68%)
Frame = +2
Query: 434 WYKGRKVLITGSSGLMGKVLIEKLLYSVPDIGCVYALVRSKRGKSPESRI 583
++K + +LITGS+G +GK+ +EK+L PD+ ++ LVR+ S E R+
Sbjct: 420 YFKDKSILITGSTGFLGKIFVEKILRIQPDVKKIFLLVRAADTSSAEQRV 469
>04_03_0543 +
16955440-16955518,16956623-16956726,16957456-16957655,
16958554-16958654,16959408-16959603,16960243-16960324,
16960402-16960668,16960790-16960917,16961285-16961465
Length = 445
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/56 (37%), Positives = 37/56 (66%)
Frame = +2
Query: 416 TSQINEWYKGRKVLITGSSGLMGKVLIEKLLYSVPDIGCVYALVRSKRGKSPESRI 583
T I E ++ + +LITG++G +GK+L+EK+L P++ +Y LVR+ + E R+
Sbjct: 3 TGGIAERFRDKTILITGATGFLGKLLVEKILRVQPEVRKLYLLVRAPDAIAAEERV 58
>04_03_0539 +
16892822-16892900,16894004-16894107,16894718-16894917,
16896078-16896178,16897546-16897735,16898377-16898458,
16899374-16899501,16899846-16900026
Length = 354
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/56 (37%), Positives = 37/56 (66%)
Frame = +2
Query: 416 TSQINEWYKGRKVLITGSSGLMGKVLIEKLLYSVPDIGCVYALVRSKRGKSPESRI 583
T I E ++ + +LITG++G +GK+L+EK+L P++ +Y LVR+ + E R+
Sbjct: 3 TGGIAERFRDKTILITGATGFLGKLLVEKILRVQPEVRKLYLLVRAPDAIAAEERV 58
>04_03_0545 +
16996340-16996418,16998039-16998142,16999796-16999995,
17000186-17000228
Length = 141
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/53 (39%), Positives = 35/53 (66%)
Frame = +2
Query: 425 INEWYKGRKVLITGSSGLMGKVLIEKLLYSVPDIGCVYALVRSKRGKSPESRI 583
I E ++ R +LITGS+G + K+L+EK+L PD+ +Y LVR+ + + R+
Sbjct: 6 IAERFRDRSILITGSTGFLAKMLVEKILRIQPDVRKLYLLVRAPDAAAAKERL 58
>07_03_0076 - 13123676-13123720,13124611-13124714,13124813-13124891
Length = 75
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +2
Query: 425 INEWYKGRKVLITGSSGLMGKVLIEKLLYSVPDIGCVYALVRSKRGKSPESRIE 586
+ E + R VLITG++G + K+L+EK+L P + +Y LVR+ S R+E
Sbjct: 6 VAERFHSRTVLITGATGFIAKLLVEKILRLQPGVKRLYLLVRAADQVSANRRVE 59
>09_04_0592 -
18823706-18823856,18823979-18824171,18824329-18824491,
18824588-18824779,18825002-18825063,18825167-18825287
Length = 293
Score = 31.5 bits (68), Expect = 0.76
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 449 KVLITGSSGLMGKVLIEKLLYSVPDIGCVYALVRSKRGKSPESRIEDMWKLP 604
KV +TG+SG + LI++LL + G Y ++ + R S ++ +W+LP
Sbjct: 8 KVCVTGASGFVASWLIKRLL----EAG--YHVIGTVRDPSNRDKVSHLWRLP 53
>01_01_0960 +
7546081-7546161,7546439-7546537,7546650-7546706,
7547106-7547261,7547350-7547434,7547572-7547662,
7547776-7547940,7548025-7548144,7548243-7548315,
7548397-7548562,7548647-7549290,7550080-7550258,
7550346-7550469
Length = 679
Score = 31.1 bits (67), Expect = 1.0
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Frame = -2
Query: 516 TLYSNFSIKTLPISPEEPVIRTFRPLYHSFICDVIVISVSSYHLYADDLQIYTQTSLSEL 337
TL + + LP P+ P+ RP+ HSF C ++ S +S H L+ + L L
Sbjct: 73 TLQPDPDQENLPTLPDPPLPEQPRPVVHSF-CKILTPSDTSTHGGFSVLRRHANECLPPL 131
Query: 336 TNAMKTLNNDLSIL----SRWSNSHGLRVNPSK 250
+M T +L S W H R P +
Sbjct: 132 DMSMATPTQELITKDLHGSEWRFKHIYRGQPRR 164
>11_01_0475 - 3669734-3671452
Length = 572
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 303 SILSRWSNSHGLRVNPSKTQVIVVGSSRXCSKVKWSQLPAILFDGVP 163
++LS S SHG PSK S+ CS PA++ D P
Sbjct: 424 TLLSAISCSHGRNFLPSKVSSYFTSSNGSCSNGGAMSEPAVIIDKAP 470
>08_01_0083 - 604175-605776
Length = 533
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 371 RSSAYRW*EETEITMTSQINEWYKGRKVLITGSS 472
R S RW E E T S++ G LITGSS
Sbjct: 374 RESLERWVREPEFTYMSKLQSGGGGGVALITGSS 407
>06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245
Length = 396
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 630 ISELFRNLTGNFHMSSMRDSGLFPRLDRTSAY 535
+ L +NL+ N H+ +FPRL+ T AY
Sbjct: 172 VKSLVQNLSANLHVPVSCKIRIFPRLEDTLAY 203
>04_01_0526 -
6901003-6901056,6901070-6901404,6901423-6901607,
6902201-6904641
Length = 1004
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 413 MTSQINEWYKGRKVLITGSSGLMG-KVLIEKLLYSVPDIGCVYALVRSKRGKSPESRIED 589
+++ N+W + RK + GSS ++G +L+ L S+ G Y + +K+ P S+
Sbjct: 447 ISTSSNKWKRNRKHWVLGSSLILGTSILVNFALISIFLFG-TYCRIATKK-NIPLSQASS 504
Query: 590 MWKLPVR 610
+LP++
Sbjct: 505 KSQLPLK 511
>02_01_0510 + 3703715-3705040
Length = 441
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 532 RVRAGAVQARKEPGITHRRHVE 597
++R ++AR E GI+H +HV+
Sbjct: 228 KIREAGIKARHEAGISHNKHVK 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,878,551
Number of Sequences: 37544
Number of extensions: 407771
Number of successful extensions: 881
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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