Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p06
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...    64   1e-10
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    33   0.29 
Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical p...    28   8.4  
U50311-2|AAA92308.2|  486|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U40028-4|AAA81115.1|  758|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 24/65 (36%), Positives = 45/65 (69%)
 Frame = +2

Query: 413 MTSQINEWYKGRKVLITGSSGLMGKVLIEKLLYSVPDIGCVYALVRSKRGKSPESRIEDM 592
           M   + + Y G  VL+TG +G +GKV++EKLL+++ DI  +Y ++R+++GK+P+ R+  +
Sbjct: 1   MAFSVRDVYAGSSVLLTGGTGFLGKVIVEKLLWTIDDIQNIYLMIRTRKGKNPQERLSGL 60

Query: 593 WKLPV 607
              P+
Sbjct: 61  LHDPL 65


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 384 YADDLQIYTQTSLSELTNAMKTLNNDLSILSRWSNSHGLRVNPSKTQVIVVGSSR 220
           +ADD ++Y  T  +E  N    L + L  +  W+    L +N SKT  + VG  R
Sbjct: 108 FADDTKLYASTPKTESEN---NLQSALDAVVDWTKGSKLTLNQSKTVHVTVGKRR 159


>Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical
           protein F53C11.6 protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/105 (21%), Positives = 42/105 (40%)
 Frame = -2

Query: 477 SPEEPVIRTFRPLYHSFICDVIVISVSSYHLYADDLQIYTQTSLSELTNAMKTLNNDLSI 298
           +PE  + R F  +Y  F   + +I+++    +  +L   T T + +    +K        
Sbjct: 146 APESLIGRVFCLVYLFFGIPLYLITIADMAKFCTELMNRTYTEIIKYKYRVKRR------ 199

Query: 297 LSRWSNSHGLRVNPSKTQVIVVGSSRXCSKVKWSQLPAILFDGVP 163
             RW +    R +    QVI+ G     ++  W+ L    F  VP
Sbjct: 200 YKRWKSGRIRRESMKVGQVIIAGGEDEVAEFLWTHLEHAQFVEVP 244


>U50311-2|AAA92308.2|  486|Caenorhabditis elegans Hypothetical
           protein C25E10.4 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 638 NYSLVSYFGISQAISTCLRCVIPGSFLAWTAPARTRILYP 519
           N +   +FG++Q+ S C   V    F  W+  AR+ + YP
Sbjct: 65  NDANAQFFGVTQSASKCAHAVFALVFSIWSFKARS-VKYP 103


>U40028-4|AAA81115.1|  758|Caenorhabditis elegans Hypothetical
           protein T05A7.6 protein.
          Length = 758

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 453 TFRPLYHSFICDVIVISVSSYHLYADDLQIYTQTSLSELTNAMKTLNNDL 304
           TF   + +F    I+  +    +Y DD+Q  T    S + N +KT  ND+
Sbjct: 673 TFFATFDNFQFSNILKRLKDLVVYVDDMQYDTTPDYSYILNFLKTTANDV 722


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,585,316
Number of Sequences: 27780
Number of extensions: 375169
Number of successful extensions: 950
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)