Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p06
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.77 
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   5.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   7.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.2  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   9.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.5  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 35  HISTLNLARDDFHFSLYIY-CLV-YLFRDCELDIEDRVSLSLI 157
           H+S    A +D H  +    CL  YL++  EL  EDR + S++
Sbjct: 306 HLSVSGGALNDCHAEVVARRCLCEYLYKQLELHTEDRAAESIL 348


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 243 PVSSTGSPSIHANYSNGIILI 305
           PVSS  S  IH  +   II I
Sbjct: 75  PVSSHSSNGIHTGFGGSIITI 95


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -3

Query: 572 PGSFLAWTAPARTRILYPERYTV 504
           P   L W  PA   I  PE + V
Sbjct: 17  PPRLLGWNVPAEELIHIPEHWLV 39


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 265 GEPVEDTGHCCRQ 227
           GE +ED  H CRQ
Sbjct: 453 GETIEDLLHFCRQ 465


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 224 ELPTTMTCVFDGFTLNPCELLQRDNIDKSLFSVFIALVSSD 346
           +LP +++ + DG  + P E +   N+D+    + I  +S D
Sbjct: 638 DLPLSISWLKDGRAMGPSERVHVTNMDQYNSILMIEHLSPD 678


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +3

Query: 633 IINPCYTRT*KNQCISITLIYNIFMDSFFFKLY 731
           ++N C   T  N C   + +   F+D+   K++
Sbjct: 99  LVNNCKDITESNSCKKSSKLLQCFIDNNLMKIF 131


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 677 NALVFLCSCVTRINYSLVSYFGISQAISTCL 585
           N LV L     R  ++  +YF  S A + CL
Sbjct: 63  NTLVILAVVRERYLHTATNYFVTSLAFADCL 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,093
Number of Sequences: 438
Number of extensions: 4761
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)