Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p02
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.9  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.7  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.7  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   7.5  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   9.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 371 GAKVKSVCTFEGNTLKQVQKAPDG 442
           G      C FEGN +K +    DG
Sbjct: 342 GRPATFTCNFEGNPIKTISWLKDG 365


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 444 RPSGAFWTCLRVLP 403
           R  G FW CL  +P
Sbjct: 21  RKKGRFWECLAPIP 34


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 444 RPSGAFWTCLRVLP 403
           R  G FW CL  +P
Sbjct: 21  RKKGRFWECLAPIP 34


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 225 SPAKPPTRSPRP 260
           SP  PPT SP P
Sbjct: 94  SPTTPPTPSPPP 105


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 535 PVKGLYSEVGSRCRRFTNI 591
           P+ GLY++  +  R FT++
Sbjct: 73  PLPGLYTKSANTIRSFTHV 91


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,459
Number of Sequences: 336
Number of extensions: 3549
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)