Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4p02
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding...    76   3e-14
Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical pr...    73   2e-13
AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding...    69   3e-12
AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding...    67   1e-11
AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding...    67   1e-11
Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical pr...    59   4e-09
U41993-3|AAA83445.1|  384|Caenorhabditis elegans Nuclear hormone...    32   0.35 
AC024859-13|AAK29965.2|  338|Caenorhabditis elegans Hypothetical...    29   3.3  
Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF273797-1|AAG15145.1|  323|Caenorhabditis elegans nuclear recep...    28   7.6  

>AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding
           protein protein 6 protein.
          Length = 135

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 38/77 (49%), Positives = 49/77 (63%)
 Frame = +2

Query: 200 MKKKGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAK 379
           MK+ GVGLITRKAA  + PT+E++ +GD +     STFK T + FK G+EF+E   DG  
Sbjct: 21  MKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFKNTTLSFKLGQEFDETTPDGRT 80

Query: 380 VKSVCTFEGNTLKQVQK 430
           VKSV  FE      +QK
Sbjct: 81  VKSVVNFENGKFIHIQK 97


>Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.2 protein.
          Length = 137

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 45/113 (39%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
 Frame = +2

Query: 200 MKKKGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAK 379
           MK+ GVGLITRKAA  + P +E+R DG+ +N    STFK T++ FK GEEF E+  D   
Sbjct: 23  MKEIGVGLITRKAAAHLKPILEIRLDGETWNFDQFSTFKNTKLSFKLGEEFVENSPDDRT 82

Query: 380 VKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMT--AKDVTCTRVYK 532
             S+ TFE   L   Q        + V     E  K + T  + DV C R ++
Sbjct: 83  YNSLFTFENGKLTHRQNKIKENHKSSVLTTWLENGKLIQTYQSGDVICRREWE 135


>AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding
           protein protein 5 protein.
          Length = 136

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
 Frame = +2

Query: 200 MKKKGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAK 379
           +K+ GVGL+ RKAA A  PT+E++ +G+++++   STFK T ++F  G EF+E   DG +
Sbjct: 22  LKEVGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTTLEFTLGVEFDETTPDGRQ 81

Query: 380 VKSVCTFEGNTLKQVQK--APDGLEVTYVREFGPEEMKAVMTAKDVTCTRVY 529
            KS  T E   +  VQK       +    R F  E++   + +  V   R Y
Sbjct: 82  FKSTITIEDGKVVHVQKRIKDSDHDSVITRWFEGEKLITTLQSGSVISRRAY 133


>AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform b protein.
          Length = 137

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
 Frame = +2

Query: 200 MKKKGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAK 379
           +K+ GVG   R  A    P +E   +GDE+ + ++STFK   +K+K G   +E  ADG  
Sbjct: 23  LKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFKNYTLKWKLGTASDEKTADGRD 82

Query: 380 VKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPE-EMKAVMTAKDVTCTRVYK 532
           V SV + E + L Q++    G + + +  +    ++  V T   V CTRVY+
Sbjct: 83  VSSVFSIENDHLVQIETGKGGGKDSRIERYIENGKLVIVCTCNGVKCTRVYE 134


>AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform a protein.
          Length = 152

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
 Frame = +2

Query: 200 MKKKGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAK 379
           +K+ GVG   R  A    P +E   +GDE+ + ++STFK   +K+K G   +E  ADG  
Sbjct: 38  LKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFKNYTLKWKLGTASDEKTADGRD 97

Query: 380 VKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPE-EMKAVMTAKDVTCTRVYK 532
           V SV + E + L Q++    G + + +  +    ++  V T   V CTRVY+
Sbjct: 98  VSSVFSIENDHLVQIETGKGGGKDSRIERYIENGKLVIVCTCNGVKCTRVYE 149


>Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.6 protein.
          Length = 137

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 28/68 (41%), Positives = 43/68 (63%)
 Frame = +2

Query: 200 MKKKGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAK 379
           +K+ GVGL+ RKAA+  +PT+E++ DGD ++    STFK  ++ FK  E+F E   D   
Sbjct: 23  LKEIGVGLLIRKAASLTSPTLEIKLDGDTWHFNQYSTFKNNKLAFKIREKFVEIAPDERS 82

Query: 380 VKSVCTFE 403
             ++ TFE
Sbjct: 83  YNTLVTFE 90


>U41993-3|AAA83445.1|  384|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 39 protein.
          Length = 384

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 22/86 (25%), Positives = 39/86 (45%)
 Frame = +2

Query: 191 IHDMKKKGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRAD 370
           IH +  K   +IT+ ++  V+  +EL+   +EY L+    F    +  K  ++ +E  A 
Sbjct: 220 IHQLFVKSPNIITQISSLVVSKFIELKVTNEEYVLLVMLFFCNPAISHKLSDKAKESLAK 279

Query: 371 GAKVKSVCTFEGNTLKQVQKAPDGLE 448
             K+     F    +K  + AP  LE
Sbjct: 280 YQKMYCSALFNYCQIKYKKAAPARLE 305


>AC024859-13|AAK29965.2|  338|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.17 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 230 RKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEE 358
           + A +  TP        D+  + T++T  TTE K KP E+ EE
Sbjct: 296 KPAESTETPAAGTEPSTDDGAIETTTTTTTTENKEKPEEKMEE 338


>Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical
           protein K06B4.1 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 191 IHDMKKKGVGLITRKAANAVTPTVELRKDGDEYNLVT 301
           +H++ K   GL+ R     V+  +EL+   +EY L++
Sbjct: 210 VHNLFKDSPGLLNRTCCLLVSKLIELKVTNEEYQLLS 246


>AF273797-1|AAG15145.1|  323|Caenorhabditis elegans nuclear receptor
           NHR-51 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 191 IHDMKKKGVGLITRKAANAVTPTVELRKDGDEYNLVT 301
           +H++ K   GL+ R     V+  +EL+   +EY L++
Sbjct: 162 VHNLFKDSPGLLNRTCCLLVSKLIELKVTNEEYQLLS 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,478,718
Number of Sequences: 27780
Number of extensions: 319188
Number of successful extensions: 812
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)