Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4o21
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 40 3e-04
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.11
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.33
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 1.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.0
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 4.0
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 5.3
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 5.3
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 25 7.0
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 25 7.0
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 25 7.0
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 7.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.0
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 9.3
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 9.3
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 25 9.3
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 9.3
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 39.9 bits (89), Expect = 3e-04
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 1/176 (0%)
Frame = -3
Query: 551 SKILSVLLSNSCVLRSSHS-LNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKS 375
S + SVL S+S + SS S + S T + S + +P+ ++ S S +L S + + S
Sbjct: 533 SPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFS-SVSSILSSSTSSPSSTS 591
Query: 374 TSIFKHL*YATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVS 195
SI +T+ S + SSS +S++ L +P + + S IIS S +S
Sbjct: 592 LSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILS 651
Query: 194 KGLMAFIKSSFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTXLGSFSSGIKSALILL 27
+ SS S + I S+ V SS +L + S SS I S+ L+
Sbjct: 652 SSISTIPISSSLS-TYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLV 706
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.5 bits (68), Expect = 0.11
Identities = 47/181 (25%), Positives = 70/181 (38%)
Frame = -3
Query: 551 SKILSVLLSNSCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKST 372
S I S S+S +S +++ SS+ TS + + + S S S L+ + S+
Sbjct: 271 SIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSS-SFSSTLSSSSMSSS 329
Query: 371 SIFKHL*YATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSK 192
S F ++ +S S+ SSSF+STT SS + S S S S
Sbjct: 330 SSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSS 389
Query: 191 GLMAFIKSSFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTXLGSFSSGIKSALILLELSDI 12
SS S + + KS SS + F N T S S +L L I
Sbjct: 390 SSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPI 449
Query: 11 M 9
+
Sbjct: 450 L 450
Score = 29.9 bits (64), Expect = 0.33
Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 7/168 (4%)
Frame = -3
Query: 521 SCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL*YAT 342
S S S SS + TS + + S S +S + ++ S+ T
Sbjct: 172 SSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT 231
Query: 341 YFDLSFK--PSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVS----KGLMA 180
LS PST SSS S++ SS + +S S +I S S S ++
Sbjct: 232 SSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291
Query: 179 FIKSSFCSGVVNGKSIEKLSSSVHS-SGTLFRRNVTXLGSFSSGIKSA 39
SS S +I SSS S S TL +++ SFSS S+
Sbjct: 292 SSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS 339
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 29.9 bits (64), Expect = 0.33
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 76 VTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQ 237
VTL L VP+ + S DLPLT D+F + L I ++TEQ
Sbjct: 640 VTLTLEGVPDFKVYSNPISTDLPLTLQSPSDEFSTIYAWSDYLYIVGIDMETEQ 693
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 457 EVLRSIFVDEPFKLWLERNTHEFDNN 534
EV+ IF +K W E NT F N+
Sbjct: 318 EVIDKIFNGNAYKRWTEENTSNFSND 343
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 214 SDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGL 324
SDI +T + P G N + KV + +EDE D L
Sbjct: 4375 SDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDEL 4411
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 115 DDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDA 294
+++N + PL E D F + P L++ E PA+ +NNN DA
Sbjct: 641 NEENSELPPPLEPAEIGDPFRSVNDPRRVLSLPHMASADEDHRIPASDNQNNNNN---DA 697
Query: 295 N 297
N
Sbjct: 698 N 698
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.8 bits (54), Expect = 5.3
Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 11/143 (7%)
Frame = +1
Query: 82 LRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSG 261
L L +PE+ + SI + P + I+P E L +E K P G
Sbjct: 1367 LFLLEIPEKSYLTEKVSISMIFAHPSVSGIYETRIEPIERLILEMGSRKRFNNSVPGALG 1426
Query: 262 D----DNNNRKVVDANEDEYT-VDGLKLKSKYVAYYKCLKILVDFLVMYVSKETNMKEYE 426
++ D ++++ + +DG+++ Y ++ V L M K+ Y+
Sbjct: 1427 KGFEFGFESKMFTDPSDNDVSYLDGVEMNYLYAFHFSISNRFVFSLFMPHLKKVEAIIYD 1486
Query: 427 QV------YTLGRQLYEVLRSIF 477
++ + ++YE LRS F
Sbjct: 1487 KLPGSDMSFPSISKIYEELRSKF 1509
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 130 SIDLPLTTPEQKDDFMNAIKPFETL-NIESDIIKT 231
S+D+P+ D ++A+K F+TL +++ +II T
Sbjct: 1174 SVDVPVIIKISLDSHLDALKMFDTLFHVKLEIITT 1208
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 55 DENDPXNVTLRLNSVPEECTDDDNFSIDLPLTTPEQK 165
+E +P +V + L P E DDN ++ + E+K
Sbjct: 85 NEKEPRDVRISLTFQPNEYLQDDNLTLVKEVRIKEEK 121
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 352 YKCLKILVDFLVMYVSKETNMKEYEQVYTL 441
Y C+ + F++ +++KET E+V L
Sbjct: 437 YACINLFSSFMIFFLAKETKGLTLEEVNDL 466
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 196 ETLNIESDIIKTEQTDAPATSGDDNNN 276
ET N+ES K D A S +DNNN
Sbjct: 110 ETHNLESPAWKHADYDGVAASVNDNNN 136
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 97 VPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLN 207
+P ++ F+ID P+Q+D +NA+ F N
Sbjct: 910 MPRSLFEEIFFAIDSLTPNPQQQDTVINAVPTFAPYN 946
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 7.0
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = -3
Query: 317 STVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFIKSSFCSGVVNGK 138
+TV SSS +STT SSP + + + S S S + SS S +
Sbjct: 125 TTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 184
Query: 137 SIEKLSSSVHSSGT 96
S SSS SS +
Sbjct: 185 SSSSSSSSSSSSSS 198
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 259 GDDNNNRKVVDANEDEYTVDGLKLKSK 339
G N V+D NEDE +V ++L+ K
Sbjct: 480 GFKNKGNIVIDENEDEPSVQTIQLQGK 506
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 176 IKSSFCSGVVNGKSIEK 126
++SSFCSG+ N + +EK
Sbjct: 97 LQSSFCSGIENLQHVEK 113
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +1
Query: 340 YVAYYKCLKILVDFL-----VMYVSKETNMKEYEQVYTLGRQLYEVLRSIFVDEPFKLWL 504
Y+ ++CL I+++FL + +++ + EQV + RQ+++ L I + F +
Sbjct: 103 YIDQFRCLHIVMEFLDCNLYQLISTRKNDPLTLEQVQDIMRQIFKGLNHIHTNGFFHRDM 162
Query: 505 ERNTHEFDNNTD 540
+ +N+D
Sbjct: 163 KPENILISSNSD 174
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = +1
Query: 19 LSSNKIKADLIPDENDPXNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFE 198
+SS L D+ + + +S P + D+N + + P+ +DFM+ +PF
Sbjct: 456 ISSTNAPTHLNEDDLNQFTSNISSSSKPRK---DNNKTANSSKPIPDS-EDFMDITRPFN 511
Query: 199 TLNIESDIIKTEQ 237
L+ + + EQ
Sbjct: 512 ILSPSKEALSEEQ 524
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.132 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,158
Number of Sequences: 5004
Number of extensions: 51608
Number of successful extensions: 165
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -