Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4o21
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77662-13|CAD54139.2| 257|Caenorhabditis elegans Hypothetical p... 34 0.099
Z77662-12|CAB01202.2| 338|Caenorhabditis elegans Hypothetical p... 34 0.099
Z81483-3|CAB03961.1| 152|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z81062-3|CAB02948.2| 325|Caenorhabditis elegans Hypothetical pr... 31 0.93
AC024859-3|AAK29969.2| 871|Caenorhabditis elegans Hypothetical ... 29 2.1
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 29 2.8
U50067-5|AAY86219.1| 306|Caenorhabditis elegans Hypothetical pr... 29 3.7
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 28 4.9
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr... 28 6.5
AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical... 28 6.5
Z81564-5|CAB04569.1| 656|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 27 8.6
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 27 8.6
U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protei... 27 8.6
>Z77662-13|CAD54139.2| 257|Caenorhabditis elegans Hypothetical
protein F47B8.9b protein.
Length = 257
Score = 33.9 bits (74), Expect = 0.099
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 494 LNGSSTKMLRKTS-YNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL*YA 345
LNG+S ++ T+ Y NV C L+S+ T+I K +I KH+ YA
Sbjct: 6 LNGASPEVATTTAIYAWWNNVAACLILIPLISISTFILLKGKTILKHMKYA 56
>Z77662-12|CAB01202.2| 338|Caenorhabditis elegans Hypothetical
protein F47B8.9a protein.
Length = 338
Score = 33.9 bits (74), Expect = 0.099
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 494 LNGSSTKMLRKTS-YNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL*YA 345
LNG+S ++ T+ Y NV C L+S+ T+I K +I KH+ YA
Sbjct: 6 LNGASPEVATTTAIYAWWNNVAACLILIPLISISTFILLKGKTILKHMKYA 56
>Z81483-3|CAB03961.1| 152|Caenorhabditis elegans Hypothetical
protein C43D7.5 protein.
Length = 152
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +1
Query: 73 NVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPA 252
NV ++++ + C + + +S T ++KD+F N +T+N + E+ D
Sbjct: 7 NVDTKVDNRKDNCDNTNTYS-----HTVDRKDNFDNTTTNTKTVNRNDNCNNQEEGDVNM 61
Query: 253 TSGDDN-NNRKVVDANEDEYTV 315
+DN NNR+ ++ Y++
Sbjct: 62 YRRNDNCNNREATNSRSANYSI 83
>Z81062-3|CAB02948.2| 325|Caenorhabditis elegans Hypothetical
protein F15A4.4 protein.
Length = 325
Score = 30.7 bits (66), Expect = 0.93
Identities = 39/159 (24%), Positives = 71/159 (44%)
Frame = -3
Query: 539 SVLLSNSCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKSTSIFK 360
++LLS + S N S K ++ S + ++ F+L++L I S S++K
Sbjct: 162 NLLLSRMYIFPSYGGFNASYVKYVQWASLSMFQSI------FLLIALCFTIICSSVSLYK 215
Query: 359 HL*YATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMA 180
+ S + S + S F S F ++ S L+ C V + + ++ + + A
Sbjct: 216 LIILPDRIK-SAEKSLCFVSLFYSIAFLVVAVSQLIF--VFCEVCL-KNRLYLLFQ-FFA 270
Query: 179 FIKSSFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTXLGS 63
F + S V+ S +LS+ + SGT +RR + GS
Sbjct: 271 FDFLTVGSAVIIMLSSPQLSNFLGFSGTFYRRKASPPGS 309
>AC024859-3|AAK29969.2| 871|Caenorhabditis elegans Hypothetical
protein Y71H2AM.10 protein.
Length = 871
Score = 29.5 bits (63), Expect = 2.1
Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 4/150 (2%)
Frame = -3
Query: 548 KILSVLLSNSCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITK--KS 375
K + ++ N V S G S + + TS+ LP +++ ++ + ++ +TK +
Sbjct: 512 KSMDLVSENISVQNKEVSTTGLSARPICDTSFRILPILFSPAFFKVEIAHSKSLTKLYQQ 571
Query: 374 TSIFKHL*Y--ATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFK 201
SIF + Y AT+ L+ S+ + S S R L S + V ++ D +
Sbjct: 572 CSIFASVSYSDATWEPLNDLDSSYFEMSAHSDNERALAVSHHASKVHVIAI----DENWP 627
Query: 200 VSKGLMAFIKSSFCSGVVNGKSIEKLSSSV 111
+ ++ S+ C+ +NG S L+ +V
Sbjct: 628 LPVVEISLQSSAQCASTINGASPAALAVTV 657
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 208 IESDIIKTEQTDAPATSGDDNNNR-KVVDANEDEYTVDGLKLK 333
+ES +I E + G D + R KVV+ +++E T D K +
Sbjct: 288 VESSVISQEVPETGYGDGGDKSKREKVVETHQEEQTYDSFKFE 330
>U50067-5|AAY86219.1| 306|Caenorhabditis elegans Hypothetical
protein C18F3.4 protein.
Length = 306
Score = 28.7 bits (61), Expect = 3.7
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +1
Query: 10 IMSLSSNKIKADLIPDENDPXNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIK 189
+ SLS ++ D P+++ P T NSV E DD++ S + L+ P ++ +
Sbjct: 49 VASLSQCNLRDD--PNDDQP---TTSSNSVKESINDDESNSENNKLSPPRRQSN------ 97
Query: 190 PFETL-NIESDIIKTEQTDAPATSGDDNN 273
P +L I S +K E TD+ S N+
Sbjct: 98 PHSSLPAISSSTVKNEPTDSWTPSALSND 126
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 52 PDENDPXNVTLRLNSVPEECTDDD 123
PD N N +RL VP C +DD
Sbjct: 149 PDSNGEVNHVIRLRGVPWSCKEDD 172
>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
protein R09H10.5 protein.
Length = 1603
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -3
Query: 179 FIKSSFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTXLG---SFS-SGIKSALILLE 24
F+ ++F + VNG S +SSS SS + F +G S+S SG + L LE
Sbjct: 706 FVLTTFKARTVNGASFPDVSSSKFSSASAFLNATNDIGIGYSYSPSGPQPGLFALE 761
>AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical
protein Y11D7A.12a protein.
Length = 507
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 151 TPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEY 309
TPE+ M+ P +T I II TE D+P+ RK D +E+
Sbjct: 326 TPERYTQHMSPNLPLQTATIAPLIIPTENYDSPSYR-QPAIKRKATDLTNEEH 377
>Z81564-5|CAB04569.1| 656|Caenorhabditis elegans Hypothetical
protein K05C4.5 protein.
Length = 656
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +1
Query: 7 TIMSLSSNKIKADLIPDENDPXNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAI 186
T++S +KA+ EN+ + + + EE + + + + +++ F N I
Sbjct: 566 TVVSAQDGPLKANKKQRENEDTRLLVNGMRLREEVEQNGD---GMSPSKRTRRNSFKNEI 622
Query: 187 KPFETLNIESDIIKTEQT--DAPATSG 261
PF+++N S I++ E T + P T+G
Sbjct: 623 PPFQSMN--SRIVQLEVTGDEIPKTAG 647
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = -1
Query: 532 CCQIRACCVPATV*TARRQKCCAKPRTTVCL-TCTLARILSCWSLC 398
CC+ R CC R + CC RT C CT R C C
Sbjct: 68 CCRPRCCCC------CRPKCCCTCCRTCCCTRCCTCCRPCCCGCGC 107
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = -1
Query: 532 CCQIRACCVPATV*TARRQKCCAKPRTTVCL-TCTLARILSCWSLC 398
CC+ R CC R + CC RT C CT R C C
Sbjct: 70 CCRPRCCCC------CRPKCCCTCCRTCCCTRCCTCCRPCCCGCGC 109
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = -1
Query: 532 CCQIRACCVPATV*TARRQKCCAKPRTTVCL-TCTLARILSCWSLC 398
CC+ R CC R + CC RT C CT R C C
Sbjct: 73 CCRPRCCCC------CRPKCCCTCCRTCCCTRCCTCCRPCCCGCGC 112
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
protein F54D11.2 protein.
Length = 1145
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -3
Query: 518 CVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKH 357
C + S N + K L + NC + T ++ FM+ +L ++ SI K+
Sbjct: 642 CQWHTVTSANAQALKNLYTIANNCTEDAITWTHQFMIENLEVHMLASYLSILKY 695
>U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protein
175 protein.
Length = 287
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = -3
Query: 284 TFRLLLS---SPLVAGASVCSVLIISDSIFKVSKGL 186
TF L +S S +V AS+CSVL+I + I K+S+ +
Sbjct: 2 TFALTVSCATSAVVITASLCSVLVIMNDINKLSEDI 37
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.132 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,710,188
Number of Sequences: 27780
Number of extensions: 296299
Number of successful extensions: 765
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -