Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4o20
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    95   4e-21
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    94   1e-20
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    91   9e-20
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.24 
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    28   0.73 
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   0.97 
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   1.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   2.2  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   2.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   3.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   3.9  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   3.9  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   5.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.8  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   9.0  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    24   9.0  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    24   9.0  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 95.1 bits (226), Expect = 4e-21
 Identities = 39/68 (57%), Positives = 60/68 (88%)
 Frame = +3

Query: 3   RYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREK 182
           +Y+AAYLL  +GGK +P+A+D+E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG EK
Sbjct: 2   KYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEK 61

Query: 183 LSSMPVGG 206
           L+++P GG
Sbjct: 62  LATVPTGG 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 93.9 bits (223), Expect = 1e-20
 Identities = 40/68 (58%), Positives = 60/68 (88%)
 Frame = +3

Query: 3   RYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREK 182
           +Y+AAYLL  +GGK +P+A+D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG EK
Sbjct: 2   KYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEK 61

Query: 183 LSSMPVGG 206
           LS++P  G
Sbjct: 62  LSTVPSAG 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 90.6 bits (215), Expect = 9e-20
 Identities = 37/68 (54%), Positives = 60/68 (88%)
 Frame = +3

Query: 3   RYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREK 182
           +Y+AAYLL  +GGK +P+A+D+E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG EK
Sbjct: 2   KYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEK 61

Query: 183 LSSMPVGG 206
           L+++P GG
Sbjct: 62  LATVPSGG 69


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.5 bits (63), Expect = 0.24
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = -3

Query: 136 SSVITFLSFSASASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 8
           SSV T LS SAS+SIP  +     STS ++  V+P S++S  +++
Sbjct: 8   SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52



 Score = 27.1 bits (57), Expect = 1.3
 Identities = 21/57 (36%), Positives = 32/57 (56%)
 Frame = -3

Query: 184 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYA 14
           SF+ PA+ S  TSL  SS     S SAS +  +   + S+S+A+    P S++S +A
Sbjct: 70  SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS----PTSSSSSHA 122


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 151 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKY 17
           + L + S  T +S S+  S+PT+  +  T + +  V PPS  S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -3

Query: 184 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTA 26
           SF  P+A +   S P+SS+ +F + SA+++ P+     + S  A    P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 166 AISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 23
           ++S S+ L  S++ T  S   +AS+PT   I S S        P+T+S
Sbjct: 79  SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 66   VEKILSSVGIEADAEKLKKVITELNG 143
            V++I   VG+E D+E  K  + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -3

Query: 151 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 8
           T LP ++V T  SFS SAS  T     +++    +V PPST+     T
Sbjct: 37  TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -3

Query: 202 PTGIDDSFSRPAAISCSTSLPLSS---VITFLSFSASASIPTELRIFSTSAAAGVVLPPS 32
           PT    S+   +++  S+S P SS    +T  S S S+   T     STS++       S
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261

Query: 31  TASKYAAT 8
           TAS  +++
Sbjct: 262 TASSSSSS 269


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -3

Query: 208 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLS----FSASASIPTELRIFSTSAAAGVVL 41
           PPP     SFS    I+ ++ +P SS  T  +    ++ S+ +P+ + I S S ++  VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245

Query: 40  PPS 32
           P S
Sbjct: 246 PTS 248



 Score = 24.2 bits (50), Expect = 9.0
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -3

Query: 154 STSLPLSSVITFLSFSASASIPTELRIFSTSAAAGV 47
           S+ LP SSVI+  S S+S+ +PT + I STS    V
Sbjct: 226 SSFLP-SSVISSASLSSSSVLPTSI-ITSTSTPVTV 259


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 334 TKLYKSTRRWSLFQFMF 384
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = -3

Query: 178 SRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 23
           S P+A+S +TS+P  S+ + +S S S S  T L   S+S  + V+   +T S
Sbjct: 139 SSPSAVSSTTSIP--SISSTISSSVSTSSFTSL---SSSGFSTVLSSTNTTS 185


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = -3

Query: 205 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVV 44
           PPTG   S S P         + STS+P+    T  + + S+ +PT     STS      
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTS 234

Query: 43  LPPSTAS 23
           +P   +S
Sbjct: 235 IPTGGSS 241



 Score = 24.6 bits (51), Expect = 6.8
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -3

Query: 172 PAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 8
           P   + STS+P+    T  + + S+ +PT     STS      +PP+  S    T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTSIPPTGNSTTPVT 302


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 338 NFTKVRGAGRYSSLCFKSNMMASVF 412
           NF  +RG GRY++    S+ +A+V+
Sbjct: 122 NFYNLRGDGRYNAYDPSSDSLANVY 146


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +1

Query: 7   TWPRIYWLCWV 39
           +W RI+W+C++
Sbjct: 303 SWKRIFWMCYI 313


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = -3

Query: 133 SVITFLSFSASA---SIPTELRIFSTSAAAGVVLPPSTAS 23
           S++  LSFS++    S+P++L+ F+ +++    + P TAS
Sbjct: 124 SLLALLSFSSNHRLHSMPSQLQPFNNASSYTTPMAPFTAS 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,241,027
Number of Sequences: 5004
Number of extensions: 15751
Number of successful extensions: 87
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)