Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4o20
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    75   2e-14
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    73   1e-13
Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    32   0.21 
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    32   0.21 
Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic catio...    27   6.0  
AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    27   6.0  

>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 46/111 (41%), Positives = 55/111 (49%)
 Frame = +3

Query: 3   RYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREK 182
           RYV+AYLLAVLGG   P   D++ ILS+VG++ADAE  K V++ L GK VE+LIA G   
Sbjct: 2   RYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAG 61

Query: 183 LSSMPVGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLFD 335
           L S  V GG                                   MGFGLFD
Sbjct: 62  LVS--VSGGAAPAAAAAPAAGGAAPAADSKPAKKEEPKEESDDDMGFGLFD 110


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 32/68 (47%), Positives = 46/68 (67%)
 Frame = +3

Query: 3   RYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREK 182
           +Y+ AYLLA LGG  +P+A DV K+L + G++ D E    V+  L GK + ++IA G+ K
Sbjct: 2   KYLGAYLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKVK 61

Query: 183 LSSMPVGG 206
           LSS+P GG
Sbjct: 62  LSSVPSGG 69


>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 45  TTPAAADVEKILSSVGIEADAEKLKKVITEL-NGKDVEQLI 164
           +TPA+A   +I  + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 45  TTPAAADVEKILSSVGIEADAEKLKKVITEL-NGKDVEQLI 164
           +TPA+A   +I  + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical
           protein F52F12.1a protein.
          Length = 585

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +3

Query: 84  SVGIEADAEKLKKVITELNGK---DVEQLI 164
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 297 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 326


>Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical
           protein F52F12.1b protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +3

Query: 84  SVGIEADAEKLKKVITELNGK---DVEQLI 164
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 309


>AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic cation
           transporter 1 protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +3

Query: 84  SVGIEADAEKLKKVITELNGK---DVEQLI 164
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 309


>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 160 SCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYA 14
           S ST  P+S+ +   + +   SIP+     S+   +  + PPS+ASK A
Sbjct: 436 SISTVNPMSASMFVPATAKEISIPSNSSATSSPFKSSSIAPPSSASKPA 484


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,938,354
Number of Sequences: 27780
Number of extensions: 87940
Number of successful extensions: 353
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)