Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4o15
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    27   2.8  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.8  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    27   3.7  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   3.7  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    26   6.4  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   6.4  
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    26   6.4  

>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 592 EEVQGEAGPFDRTGKNATEEGEIETDYGPR 681
           EE+Q   G ++RT     ++ ++ETD+ P+
Sbjct: 252 EEIQSSGGAWERTKVFVAKKSDMETDFIPQ 281


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 476 LKPPDIKDVKVASDYEGTKKLKRPRKAKVAGKRDL 580
           L+PP  KD+ +     GTKK K  +K K   K+++
Sbjct: 15  LEPPSFKDLLIPIPNSGTKK-KNKKKKKPKAKKNV 48


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 308 QQVLQCEEAFLNPKLQSKEEASSRIDVQVKT 400
           Q++++CE + +    Q KEE  S +D +++T
Sbjct: 55  QKMIECEPSCVEYFRQRKEELESHVDSEIET 85


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 678 WSIIGFDFSFLCSIFTGSIKWSSFSLY 598
           +SI+G  F F+CS+  G I + S   Y
Sbjct: 533 FSILGAHFRFICSLNFGKISFISHEFY 559


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 542 RPRKAKVAGKRDLVNRMKKYREKLDHLIEPVKMLQRKEKSKPIMDHD 682
           +P  +  AGKRD +  +KK R++         + +R  K  P+ D++
Sbjct: 140 KPLTSAAAGKRDKLTELKKRRQER----SARSVSERTRKRSPVSDYE 182


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 566  GKRDLVNRMKKYREKLDHLIEPVKMLQ 646
            GKR    R K+   K DH+++P+  LQ
Sbjct: 1300 GKRGKPLRSKELNRKHDHIVQPMGKLQ 1326


>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/64 (21%), Positives = 28/64 (43%)
 Frame = +2

Query: 503 KVASDYEGTKKLKRPRKAKVAGKRDLVNRMKKYREKLDHLIEPVKMLQRKEKSKPIMDHD 682
           KVA     +   +RP+  ++A K     +   +  +LD     V  +  +   K I D +
Sbjct: 20  KVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPINSESAMKKIEDDN 79

Query: 683 TMIY 694
           T+++
Sbjct: 80  TLVF 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,469
Number of Sequences: 5004
Number of extensions: 56203
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)