Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4o15
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1538 - 27565434-27565445,27565947-27566016,27566181-275665...    32   0.41 
05_01_0500 - 4171090-4171191,4171989-4172061,4172376-4172701,417...    29   2.9  
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892...    28   8.9  

>07_03_1538 -
           27565434-27565445,27565947-27566016,27566181-27566518,
           27566597-27566747,27566845-27566990
          Length = 238

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 229 QSGRRQQGV-VHMCDMRCQTERRVRIPSAGSTVRGGISKSQTTK*RRS 369
           +S ++++GV +H+ D   ++ER   + S GSTV G  S S T    RS
Sbjct: 112 ESSKKRKGVWIHIDDDEDESERNSAVASEGSTVTGTASASSTATSGRS 159


>05_01_0500 -
           4171090-4171191,4171989-4172061,4172376-4172701,
           4173164-4173555,4174521-4174853,4177118-4177209,
           4178052-4178111,4178760-4178903,4180142-4180213,
           4180345-4180510,4180776-4180923
          Length = 635

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 164 EWMGQKEVY--SEMLMDCFGLLLSNL-DGDNKESCICATCVVRLRDAYAFRQQVLQCEEA 334
           E  G +E +   E L+D FGLLLS +  G    S   A C +  R++  F +  L C  A
Sbjct: 573 ELSGPREFFFSPEFLVDMFGLLLSEVKSGLLASSAAVAKCELS-RESSGFGRHTLSCSNA 631

Query: 335 FL 340
            +
Sbjct: 632 LV 633


>01_05_0265 +
           20188160-20188211,20188291-20189019,20189103-20189231,
           20189857-20189938,20190034-20190166,20190269-20190340,
           20190478-20190573,20190651-20190764,20190838-20191050,
           20191144-20191242,20191328-20191488,20191589-20191685,
           20191828-20191989,20192068-20192148,20192242-20192320,
           20192414-20192550,20192638-20192688,20192776-20192844,
           20193583-20193700,20194142-20194197
          Length = 909

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -1

Query: 616 VQLLPVLLHAVDEIPLAGDFRFPRPLQLLRAFVVARHFDVLNVGRLQVLITVHIAWFVSV 437
           + L P LL   D I L  D    +  + L   +V+ HF+  N+  L+VL    +  ++S 
Sbjct: 618 IHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPNIEELEVLDLPTLVAYISY 677

Query: 436 VHWHVR 419
              H++
Sbjct: 678 ARKHIQ 683


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,271,964
Number of Sequences: 37544
Number of extensions: 361472
Number of successful extensions: 1012
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)