Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4o15
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.0  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   4.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.1  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   9.1  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -2

Query: 168 HSYSDVKSRHFFIERQHRHNAGSTMGPLPFPAIVVTAIIYLI 43
           H+YS+    H  + +   +   +T+G    P  V+  + Y I
Sbjct: 184 HTYSETGPSHCVVCQNFFYQIYATLGSFYIPLFVMIQVYYKI 225


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/28 (28%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 392 LERQSCLRLLLYFVVWDLEMP-PRTVEP 312
           +E++  + +L++   WD +MP P  ++P
Sbjct: 16  IEKEQMMNILMFLPSWDGKMPQPCILKP 43


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -2

Query: 690 IIVSWSIIGFDFSFLCSIFTGSIKWSSFSLYFFMRLTRSLLP 565
           +I++  + G    F+C   T +       LY F    R ++P
Sbjct: 13  VIINVLLHGQVICFVCKDITSTSALYRLKLYLFCDYDRDIIP 54


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 304 PSAGSTVRGGISKSQTTK 357
           P+AG T  GG+  +  TK
Sbjct: 76  PTAGMTFNGGVGPNGLTK 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,742
Number of Sequences: 438
Number of extensions: 3916
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)