Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4o14
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0701 + 19583386-19583554,19584290-19584441,19585123-195851...    32   0.53 
07_01_0670 + 5030971-5032698                                           29   4.9  
04_04_0793 - 28100562-28100789,28100897-28100975,28101060-281014...    29   4.9  

>09_04_0701 +
           19583386-19583554,19584290-19584441,19585123-19585181,
           19585319-19585344,19585407-19585758,19586184-19586667
          Length = 413

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
 Frame = +2

Query: 155 KIKPNTHPHSAYH------VARVQHIRTLRLCSVCE-KARGMTSHCIMKSLPISLS 301
           +++P+ H +S +H       + + H+R+L   S       GMTSH + +++P S++
Sbjct: 240 RLRPHMHDNSLFHRPTARRASNLAHLRSLTAASETRGHGHGMTSHAVQQTIPSSMA 295


>07_01_0670 + 5030971-5032698
          Length = 575

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 239 KHYTSATCECVERELHGRRSGDGC*VLFSLRN 144
           K Y SATC    RELH   + +G  ++ S+R+
Sbjct: 104 KAYLSATCSSEARELHAEGAEEGDGLVISMRD 135


>04_04_0793 -
           28100562-28100789,28100897-28100975,28101060-28101434,
           28101534-28101882,28102000-28102102,28102136-28102454,
           28102617-28102714,28103146-28103217,28103330-28103479
          Length = 590

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +2

Query: 140 RNSVTKIKPNTHPHSAYHVARVQHIRTLRLCSVCEKARGMTSHCI 274
           R ++T   P  +P  +YH   +   RT+RL +   +  G   + +
Sbjct: 364 RTNLTASGPRPNPQGSYHYGSINVTRTIRLANSAGRVAGKQRYAV 408


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,610,071
Number of Sequences: 37544
Number of extensions: 248551
Number of successful extensions: 468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)