Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4o08
         (157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    26   0.58 
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    26   0.77 
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   1.8  
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    24   2.4  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    23   4.1  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    23   7.2  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    23   7.2  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    22   9.5  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    22   9.5  

>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 25  CFKLQIYISVEFLIYPEPQHVTIHFLGKKNFPCTS 129
           C KL   ISVE     EP  V +H + + N  C S
Sbjct: 137 CTKLPKQISVEEGALFEPMSVAVHAMTRGNLKCGS 171


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 136 SRATYMESFFCPKNVSLRAGVR 71
           S+ATY  S+ C K +  +AG+R
Sbjct: 247 SKATYKNSWQCAKGIYTKAGLR 268


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 10   KVLLKCFKLQIYISVEFLIYPEPQHVTIHFLGKKNFPCT 126
            K +L C     Y   E+L + E Q+V I ++  K+F  T
Sbjct: 2895 KYMLSCLDDGKYAFDEYLYHAEIQNVDILYISTKHFIIT 2933


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 123 TWKVFFAQKMYRYVLGFGINQKFYRN 46
           +WK     +M RYVLG   ++ F ++
Sbjct: 345 SWKKILRAQMLRYVLGSSFSEYFAKS 370


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 25   CF-KLQIYISVEFLIYPEPQHVTIHFLGKK 111
            CF KL   I+V FL +P+ Q   +HF  KK
Sbjct: 938  CFLKLGASITV-FLKFPDTQEYQLHFNRKK 966


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = -1

Query: 145 NTT-SRATYMESFFCPKNVSLRAGVRD 68
           NTT     Y++   CP NV     +RD
Sbjct: 81  NTTHENVKYLKGIKCPSNVFANPDIRD 107


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 153 FFKTPPLERRTWKVFFAQKMYRYVL 79
           FF++P L     KV+  QK  R +L
Sbjct: 223 FFESPSLNTSVAKVYINQKFIRKLL 247


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 4   NFKVLLKCFKLQIYISVEFLIY 69
           NF VLL   KL I   V  +IY
Sbjct: 519 NFSVLLAIAKLSILGKVSIIIY 540


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 61  LIYPEPQHVTIHFL 102
           L YP   HV IH+L
Sbjct: 252 LYYPRTAHVRIHYL 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,864
Number of Sequences: 5004
Number of extensions: 8898
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)