Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4o08
         (157 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23325| Best HMM Match : VPEP (HMM E-Value=1.9)                      27   3.2  
SB_36565| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  
SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.7  
SB_13721| Best HMM Match : C1_1 (HMM E-Value=1.1)                      25   9.7  
SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)                       25   9.7  

>SB_23325| Best HMM Match : VPEP (HMM E-Value=1.9)
          Length = 210

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 7   FKVLLKCFKLQIYISVEFLIYPEP 78
           ++ LL+C+KL++Y  +   + P P
Sbjct: 65  YRALLRCYKLKVYQIMSLRLLPHP 88


>SB_36565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 57  IFDLSRTPARNDTFFGQKKLSMY 125
           I DL+R  AR   F+G ++LS+Y
Sbjct: 103 IVDLARRSARYLPFYGSQRLSVY 125


>SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1386

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 154 FF*NTTSRATYMESFFCPKNV 92
           FF   TSRAT+ + F C  N+
Sbjct: 20  FFSENTSRATFTKDFGCQVNI 40


>SB_13721| Best HMM Match : C1_1 (HMM E-Value=1.1)
          Length = 256

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 154 FF*NTTSRATYMESFFCPKNV 92
           FF   TSRAT+ + F C  N+
Sbjct: 20  FFSENTSRATFTKDFGCQVNI 40


>SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)
          Length = 519

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 154 FF*NTTSRATYMESFFCPKNV 92
           FF   TSRAT+ + F C  N+
Sbjct: 9   FFSENTSRATFTKDFGCQVNI 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,547,167
Number of Sequences: 59808
Number of extensions: 58175
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 16,821,457
effective HSP length: 31
effective length of database: 14,967,409
effective search space used: 299348180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)