Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4o08
         (157 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical pr...    29   0.59 
Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z70034-7|CAA93856.1|  855|Caenorhabditis elegans Hypothetical pr...    25   9.6  
Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical p...    25   9.6  

>Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical
           protein K05C4.5 protein.
          Length = 656

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 116 KFFLPKKCIVTCWGSG*IKNSTEI*ICN 33
           K F PKK I+TCW +    N   I  C+
Sbjct: 333 KIFTPKKRIITCWAASPYGNLIAIGTCH 360


>Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical
           protein F59C6.8 protein.
          Length = 529

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 34  LQIYISVEFLIYPEPQHVTIHFLGKKNF 117
           LQ   + EF+++P+P  + +  LGK  +
Sbjct: 270 LQYKEAAEFIVFPDPDDILVPVLGKNYY 297


>Z70034-7|CAA93856.1|  855|Caenorhabditis elegans Hypothetical
           protein C18E9.7 protein.
          Length = 855

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 120 WKVFFAQKMYRYVLGFGINQKFYRNINL*LKTLKEHFKIL 1
           W V+   K Y+ V+ FGI +   + + +   T KE F +L
Sbjct: 409 WPVYHDFKSYKIVISFGIGRAESKEMEV---TNKEEFVLL 445


>Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical
           protein C08H9.3a protein.
          Length = 758

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 40  IYISVEFLIYPEPQHV 87
           +YISV F  YP+ +HV
Sbjct: 552 VYISVSFWTYPDLKHV 567


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,562,552
Number of Sequences: 27780
Number of extensions: 50456
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)