Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4o08
         (157 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   0.35 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   1.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    19   5.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    19   5.6  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    19   7.4  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 0.35
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 40  IYISVEFLIYPEPQHVTIHFL 102
           I+I   +L+YPEP + ++H+L
Sbjct: 31  IHIPEHWLVYPEP-NPSLHYL 50


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 43  YISVEFLIYPEPQHVTIHFLGKKN 114
           Y++ E  +  + Q   +H+ GK+N
Sbjct: 275 YVNTEQFVKSQYQANNVHYQGKEN 298


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 141 PPLERRTWKV 112
           PP +RRT KV
Sbjct: 905 PPTKRRTMKV 914


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 141 PPLERRTWKV 112
           PP +RRT KV
Sbjct: 943 PPTKRRTMKV 952


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 149 LKHHL*SDVHGKFFLPKKCIVTC 81
           L++HL +    K F  +KC  +C
Sbjct: 4   LEYHLRNHFGSKPFKCEKCSYSC 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,244
Number of Sequences: 438
Number of extensions: 570
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used:  2655300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)