Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4o07
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 32 0.073
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 31 0.22
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.30
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 0.30
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 29 0.52
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 29 0.68
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch... 29 0.68
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 29 0.90
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 28 1.2
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 28 1.6
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 27 2.1
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.8
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 3.6
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 27 3.6
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi... 26 4.8
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.4
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 8.4
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 32.3 bits (70), Expect = 0.073
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +1
Query: 514 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRSEQFELRLNELDAKLNML 693
EGE DD+ +ES + +++ +S+K + E +ND R E + + L A L +
Sbjct: 373 EGELDDILTTLESDREQLRRHEEHSQKLLKFIEEIRNDYEERIHALESQNSALKAHLRLA 432
Query: 694 QSA 702
A
Sbjct: 433 VDA 435
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 30.7 bits (66), Expect = 0.22
Identities = 22/97 (22%), Positives = 38/97 (39%)
Frame = +1
Query: 433 ATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHE 612
AT+QG +L+ +N L L E DD D+ + + ++ +
Sbjct: 317 ATRQGSFALLLFAIISLAANTALPLLLEDTEDDEEDESSDASNNEYNIQERNDLGNIRTG 376
Query: 613 TFKNDVGNRSEQFELRLNELDAKLNMLQSAEKLKTAI 723
T +GN SE R ++ +L S+ + T I
Sbjct: 377 TNTPRLGNLSETTSFRSENEPSRRRLLPSSRSIMTTI 413
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 30.3 bits (65), Expect = 0.30
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +1
Query: 508 QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRSEQFELRLNELDAKLN 687
+ EG++ DL KI + K KLNT ++T + + ++ E R+ L+ +LN
Sbjct: 512 ELEGKKADLTSKINRLDKDFVKLNTTYS--LLTDQVKTKQLA--LQEIESRVIRLEERLN 567
Query: 688 MLQ 696
MLQ
Sbjct: 568 MLQ 570
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.3 bits (65), Expect = 0.30
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Frame = +1
Query: 448 LLKILMRLNFDNKSNALLHLQTEGERDDLRDK-----------IESVLKHVKKLNTNSEK 594
L K+L D++ LL Q E ER DL+ E+ +K ++ TNS+
Sbjct: 521 LRKLLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSLESSLTNSQA 580
Query: 595 FMVTHETFKNDVGNRSEQFELRLNELDAKLNML 693
V+ + N++ ++ ++ +L+LNE + K L
Sbjct: 581 ECVSFQEKINELNSQIDELKLKLNEANKKYQEL 613
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 574 LNTNSEKFMVTHETFKNDVGNRSEQFELRLNELD-AKLNMLQSAEKLKT 717
L NSEKF E+ K+ V N ++ NE+D + N+L + +T
Sbjct: 360 LKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDECRRNLLWAESSCET 408
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 29.5 bits (63), Expect = 0.52
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 490 NALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRSE---QFELR 660
N++ +QT+ DL+ + E + +K L ++ ET KND N E +E
Sbjct: 315 NSINEIQTQNR--DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETE 372
Query: 661 LNELDAKLN 687
+ E KLN
Sbjct: 373 MKEARQKLN 381
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 29.1 bits (62), Expect = 0.68
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 550 SVLKHVKKLNTNSEKFMVTHETFKNDVGNRSEQFELRLNELDAKLNMLQSAEKLKTAIVT 729
+ L H+ L + H TFK++V N S +EL +EL A + S+ + I T
Sbjct: 350 AALNHISALEKETISHTDLHHTFKHEV-NSSNNYELTNDELAASSPLYTSSSVPPSHITT 408
>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 29.1 bits (62), Expect = 0.68
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +1
Query: 367 LNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR--LNFDNKSNALLHLQTEGERDDLRD 540
LN ++ +R +N++ T QG + + +NF NK N L E DLR
Sbjct: 114 LNFLMSGMADLQRTINTMQGTMNTMQGTMNTMQENMINFTNKVNTLDMRSVRAENRDLR- 172
Query: 541 KIESVLKHVKKLNTNS 588
K V+ V +N N+
Sbjct: 173 KGAYVISPVPFINGNN 188
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 28.7 bits (61), Expect = 0.90
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 2/145 (1%)
Frame = +1
Query: 301 KGLEIAHDDILDCNWDSDQVYHLNEIIFHK-QKSKRDLNSLGALFATKQGLLKILMRLNF 477
K EI + +CN D++ E++ + KR SL + K+ L K L N
Sbjct: 298 KKFEILKRERNECNAKIDELQDKLELLTDAYNREKRRARSLEERMS-KEMLTK-LGESNV 355
Query: 478 DNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNR-SEQFE 654
D+ A + + E++ L + ++S+ + + + + + ++ E++ +GN+ SE E
Sbjct: 356 DDGMAASRYDTVKREKERLSEHLKSLQEQYEHIQSVYKNVLLDRESYIMRLGNKISENNE 415
Query: 655 LRLNELDAKLNMLQSAEKLKTAIVT 729
L LNE LQ+ K + VT
Sbjct: 416 L-LNENRVLKEKLQTYLDKKESNVT 439
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/71 (19%), Positives = 33/71 (46%)
Frame = +1
Query: 379 IFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 558
I ++++ D SL ++ ++ NF +++ H ++ + +LR + +
Sbjct: 247 IIDQEETSSDDESLSKEIVNSNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIK 306
Query: 559 KHVKKLNTNSE 591
KH K+ N+E
Sbjct: 307 KHAKEAQKNAE 317
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 373 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSN 492
++ FH Q+ KRD+ +L ++ T L L+ F + +N
Sbjct: 79 QLEFHAQEGKRDVTNLTCVYGTSPQQLDRLITREFSSDAN 118
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 27.5 bits (58), Expect = 2.1
Identities = 23/118 (19%), Positives = 49/118 (41%)
Frame = +1
Query: 343 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGE 522
W + ++ + E IF K S + N + + F Q M FD N + ++ GE
Sbjct: 99 WANTKLGGIFERIFSKMDSMQ--NDMNSRFDAMQNE----MNSRFDTVQNEMTSMK--GE 150
Query: 523 RDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRSEQFELRLNELDAKLNMLQ 696
+++ ++ + + +LNT + E + R + R N +D + + ++
Sbjct: 151 MAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDSME 208
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 2.8
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Frame = +1
Query: 304 GLEIAHDDILDCNWDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDN 483
GLE + IL +S ++Y+ + + QK R L K + N D
Sbjct: 358 GLE--YTQILVSQLESQRLYYESHLSNMSQKLSRVNEEL----VLKTKIATASSNANTDL 411
Query: 484 KSNALLHLQTEGERDDLRDKIESVLKHVK----KLNTNSEKFMVTHETFKNDVGNRSEQ- 648
+S + +RDD ++ S L+H+K + + +E +V +T + +S+Q
Sbjct: 412 RSRVDISESKLKKRDDKLKRVSSQLEHLKHNYEEEKSMNENLLVRIQTLEKQNTTKSDQI 471
Query: 649 --FELRLNELDAKLNML 693
+ ++N+L+ +L L
Sbjct: 472 VSMQFQINDLNEQLRDL 488
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 322 RAQFQDLCKNLLHCRIL 272
RA+F +LC N+LH R L
Sbjct: 396 RAKFNNLCSNILHFRAL 412
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 26.6 bits (56), Expect = 3.6
Identities = 23/118 (19%), Positives = 49/118 (41%)
Frame = +1
Query: 343 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGE 522
W + ++ + E IF K S + N + + F Q M FD N + ++ GE
Sbjct: 99 WANTKLGGIFERIFSKMDSMQ--NDMNSRFDAMQNE----MNSRFDAVQNEMTSMK--GE 150
Query: 523 RDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRSEQFELRLNELDAKLNMLQ 696
+++ ++ + + +LNT + E + R + R N +D + + ++
Sbjct: 151 MAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDSME 208
>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 4.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 172 HINVQQWSHIVKWDSFKCNTHSF 240
H++V WS I K+D++ S+
Sbjct: 74 HLSVDSWSSITKYDNYTVENESY 96
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -2
Query: 433 RTMRPTS*DRVWISACEK*FRLN--GKLDR---CPNCNQVCRRAQFQDLCKNL 290
RT +P D +W +AC++ +N K R P C Q+C +Q D NL
Sbjct: 81 RTCQPKQHDSIWCTACQQTKGINEFSKAQRHVLDPRC-QICVHSQRNDGDDNL 132
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 409 LNSLGALFA-TKQGLLKI----LMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 558
+ S G L A T+ G+ + LMR +F+ L+ GE+DD + E+++
Sbjct: 1381 MTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIM 1435
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,050
Number of Sequences: 5004
Number of extensions: 49798
Number of successful extensions: 198
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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