Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4o06
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.4  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   7.6  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   7.6  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +1

Query: 304 GICRMPFDSCCPDCKLPGDDCPLVWGACSHCFHIHC 411
           GIC    ++  P+C   G DC      C+  +  +C
Sbjct: 541 GICNEDCNN--PECLFDGRDCEESLQPCNPIYDAYC 574


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 235 MKVTVKSWTGVATWRWVANDD 297
           +K   K WTG+   +W   +D
Sbjct: 188 LKGNAKHWTGIFQKKWRGYED 208


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -1

Query: 370 EGSRPQVVCSLDSSYQMAYDKSHNC 296
           +GS  Q  C L   ++      HNC
Sbjct: 47  KGSLKQYTCELKLWWEFCQRNGHNC 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,558
Number of Sequences: 336
Number of extensions: 3217
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)