Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4o06
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 111 1e-25
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 81 2e-16
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 45 1e-05
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 38 0.002
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 38 0.002
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 37 0.003
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 35 0.013
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 33 0.031
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 33 0.041
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 33 0.041
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 33 0.054
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.095
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.13
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 31 0.17
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 31 0.22
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 30 0.38
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.38
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 29 0.51
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 28 1.2
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 2.0
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 3.6
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 3.6
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 26 4.7
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 4.7
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.7
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 6.2
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 26 6.2
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 111 bits (267), Expect = 1e-25
Identities = 45/79 (56%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Frame = +1
Query: 235 MKVTVKSWTGVATWRW-VANDDNCGICRMPFDSCCPDCKLPGDDCPLVWGACSHCFHIHC 411
MKV + + +A W W DD CGICR+PFD CCP C PGD+CP+VWG C H FH HC
Sbjct: 1 MKVKILRYHAIANWTWDTPKDDVCGICRVPFDGCCPQCTSPGDNCPIVWGKCKHIFHAHC 60
Query: 412 IVKWL-HSQPQQQCPMCRQ 465
I WL S Q QCPM RQ
Sbjct: 61 IQNWLATSGSQGQCPMDRQ 79
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 80.6 bits (190), Expect = 2e-16
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Frame = +1
Query: 247 VKSWTGVATWRWVANDDNCGICRMPFDSCCPDCKLPGD-----DCPLVWGACSHCFHIHC 411
+K W VA W+W DNC ICR C +C+ D +C + WG C+H FH HC
Sbjct: 23 IKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQANTDSAAAQECTVAWGTCNHAFHFHC 82
Query: 412 IVKWLHSQPQQQCPMCRQDWKF 477
I +WL++ + CP+ ++W+F
Sbjct: 83 ISRWLNT--RNVCPLDNREWEF 102
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +1
Query: 295 DNCGICRMPFDSCCPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQPQQQCPMCRQDWK 474
+ C IC + + LP C G C H FH C+ KW S +CP+CR +
Sbjct: 1556 EECAIC---YSVLSVERTLPNKRC----GTCRHKFHASCLYKWFKSSNSSRCPLCRSSFT 1608
Query: 475 F 477
F
Sbjct: 1609 F 1609
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 37.5 bits (83), Expect = 0.002
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 385 CSHCFHIHCIVKWLHSQPQQQCPMCRQ 465
C H H HC+ WL + QQ CP+CR+
Sbjct: 328 CGHILHFHCLRNWL--ERQQTCPICRR 352
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 325 DSC--CPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQPQQQCPMCR 462
DSC C + GD C + AC H FH CI +WL + CP+CR
Sbjct: 764 DSCLICLETYTNGDICRKLQ-ACKHFFHQACIDQWL-TTGNNSCPLCR 809
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +1
Query: 292 DDNCGICRMPFDSCCPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQPQQQCPMCR 462
D+ C +C F+ D+C + C+H FH CI +WL S Q CP+CR
Sbjct: 522 DERCLVCLSNFEL--------NDECRRL-KQCNHFFHRECIDQWLTSS-QNSCPLCR 568
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 34.7 bits (76), Expect = 0.013
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 385 CSHCFHIHCIVKWLHSQPQQQCPMCRQDW 471
C H FH CI W+ + + CP+C +D+
Sbjct: 223 CEHVFHTQCIDTWMTTM-KASCPLCNEDY 250
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 33.5 bits (73), Expect = 0.031
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 301 CGICRMPFDSCCPDCKLPGDDCPLVWGA-CSHCFHIHCIVKWLH-SQPQQQCPMCRQ 465
CG CC C +P C ++ A CSH +H CI L+ S P C +CR+
Sbjct: 182 CGSSESGPPECCI-CLMPVLPCQALFVAPCSHSYHYKCIRPTLNESHPYFSCFICRK 237
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 33.1 bits (72), Expect = 0.041
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Frame = +1
Query: 328 SCCPDCKLPGDDCPLVW--GACSHCFHIHCIVKWLHSQPQQ------QCPMCRQD 468
S C D P +W G C H FH+ CI KW + +Q +CP C+ +
Sbjct: 198 SVCTDTINPSTS---IWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYCQSN 249
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 33.1 bits (72), Expect = 0.041
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = +2
Query: 392 TVSTFTVS*SGYTLSLNSSVLCADKTGSSITSETFVT*TVPGDQHNVVARSAPSTEES 565
+VS+FT S S YT +L +S TG+ S TF + +V+ SAPS+ S
Sbjct: 416 SVSSFTSSNSSYTTTLTASNTTVTFTGTGTGSATFTSSPPFYSNSSVIPTSAPSSVSS 473
Score = 31.9 bits (69), Expect = 0.095
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +2
Query: 392 TVSTFTVS*SGYTLSLNSSVLCADKTGSSITSETFVT*TVPGDQHNVVARSAPSTEES 565
+VS+FT S S YT +L +S TG+ S TF + +V+ S PS+ S
Sbjct: 308 SVSSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSSPPFYSNSSVIPTSVPSSVSS 365
Score = 31.5 bits (68), Expect = 0.13
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +2
Query: 392 TVSTFTVS*SGYTLSLNSSVLCADKTGSSITSETFVT*TVPGDQHNVVARSAPSTEES 565
+VS+FT S S YT +L +S TG+ S TF + +V+ S PS+ S
Sbjct: 362 SVSSFTSSNSSYTTTLTASNTSITYTGTGTGSATFTSSPPFYSNSSVIPTSVPSSVSS 419
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 392 TVSTFTVS*SGYTLSLNSSVLCADKTGSSITSETFVT*TVPGDQHNVVARSAPSTEES 565
+VS+FT S S YT +L +S TG+ S T + + +++ + ST S
Sbjct: 470 SVSSFTSSNSSYTTTLTASNTTVTFTGTGTGSATATSSSPYYSNSSIIVPTTVSTSGS 527
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 32.7 bits (71), Expect = 0.054
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 385 CSHCFHIHCIVKWLHSQPQQQCPMCRQDW 471
C H FH HC+ W + CP+CR ++
Sbjct: 56 CGHYFHNHCLESW--CRVANTCPLCRTEF 82
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 31.9 bits (69), Expect = 0.095
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 370 LVWGACSHCFHIHCIVKWLHSQPQQQCPMCRQDWK 474
L+ C H FH C+ KW +S CP+CR K
Sbjct: 222 LITIVCQHTFHCPCLQKWGNS----SCPVCRYTQK 252
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 31.5 bits (68), Expect = 0.13
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 385 CSHCFHIHCIVKWLHSQPQQQCPMCR 462
CSH F +HC++ L Q CP+CR
Sbjct: 375 CSHVFCLHCLI-ILQKQKVDFCPLCR 399
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +1
Query: 325 DSCCPDC---KLPGDDCPLVWGACSHCFHIHCIVKWLHSQPQQQCPMCRQD 468
D CP C D+ C H F +C+ KWL + CP+CR++
Sbjct: 104 DLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLEN--HCTCPLCRKE 152
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 30.7 bits (66), Expect = 0.22
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 385 CSHCFHIHCIVKWLHSQPQQQCPMCR 462
C H +H C+++W+ + + CP+CR
Sbjct: 647 CHHLYHRQCLLQWM--ETRSICPVCR 670
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 29.9 bits (64), Expect = 0.38
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 286 ANDDNCGICRMPFDSCCPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQPQQQCPMCRQ 465
A+D+ C +CR PD L C G+ + H C+V+WL + C +C+
Sbjct: 3 ADDEICRVCRC---EGAPDSPL-FHPCKCT-GSIRYV-HQECLVEWLGHSKKTHCELCKA 56
Query: 466 DWKF 477
++F
Sbjct: 57 KFEF 60
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.9 bits (64), Expect = 0.38
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 385 CSHCFHIHCIVKWLHSQPQQQCPMCRQ 465
C H + C++ WL + + CP CRQ
Sbjct: 100 CGHTYCYECLLNWL--KESKSCPTCRQ 124
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 29.5 bits (63), Expect = 0.51
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 385 CSHCFHIHCIVKWLHSQPQQQCPMCRQD 468
C H FH CI KW+ + CP C +
Sbjct: 339 CKHEFHRPCIAKWIVDY-RHACPTCNTE 365
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 367 PLVWGACSHCFHIHCIVKWLHSQPQQQCPMCR 462
PL+ +CSH F CI +L P CP CR
Sbjct: 39 PLIT-SCSHTFCSFCIRDYLREHP--MCPACR 67
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 385 CSHCFHIHCIVKWLHSQPQQQCPMCR 462
C H FH +CI WL + C +CR
Sbjct: 414 CKHYFHENCIKPWL--RVNGTCAICR 437
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/42 (26%), Positives = 15/42 (35%)
Frame = +1
Query: 334 CPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQPQQQCPMC 459
C C+LP + C H H C+ W P+C
Sbjct: 789 CVYCELPLRGVLVYPPVCGHIGHESCLRSWYFDNTDDALPVC 830
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 553 YRRVSVASRKTIRILRTLQTHPTKNHPPILIHSSFISRKKW 675
YR+ V +R ++LR + P P + HSSF R++W
Sbjct: 306 YRQDRVENRIQTQVLRHVDVDP----PIVEEHSSFFRRRRW 342
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 660 DKRAVNQDRW-VVFRWMCLEGPEYP 589
D +++D W ++ RW L+GPE+P
Sbjct: 124 DFTIISRDVWDLLVRWYGLKGPEFP 148
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 331 CCPDCKLPGDDCPLVWGACSHCFHIHCIV 417
CC C + G + LV C C H C V
Sbjct: 814 CCALCGIVGTEGLLVCFKCGTCVHERCYV 842
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 134 QTDQFLSVFNICLSVYVLILKI*CLF 57
Q +++ N+CL + L+++I CLF
Sbjct: 991 QNSDYVNELNMCLDGFQLVVRIACLF 1016
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/63 (23%), Positives = 24/63 (38%)
Frame = +1
Query: 271 TWRWVANDDNCGICRMPFDSCCPDCKLPGDDCPLVWGACSHCFHIHCIVKWLHSQPQQQC 450
T ++ + C IC +D C L D CS H C++ ++ +C
Sbjct: 4 TAKYEKSSARCWICYEEYDKKL--CSLSNDSWRRPC-RCSLIAHESCLISYITRSGSTRC 60
Query: 451 PMC 459
P C
Sbjct: 61 PQC 63
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 337 PDCKLPGDDCPLVWGA 384
PD K+PG +CP+ GA
Sbjct: 368 PDLKIPGVNCPIPTGA 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,335
Number of Sequences: 5004
Number of extensions: 51203
Number of successful extensions: 158
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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