Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4n22
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 207 1e-54
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 98 1e-21
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 97 2e-21
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 97 3e-21
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 97 3e-21
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 90 3e-19
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 86 6e-18
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 83 3e-17
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 77 3e-15
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 74 2e-14
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 74 2e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 74 2e-14
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 73 4e-14
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 71 2e-13
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 70 4e-13
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 64 1e-11
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 63 3e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 63 3e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 62 6e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 50 4e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 48 2e-06
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 46 7e-06
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 42 1e-04
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 33 0.042
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 31 0.17
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.68
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 26 4.8
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M... 26 6.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 6.3
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 207 bits (506), Expect = 1e-54
Identities = 99/144 (68%), Positives = 117/144 (81%)
Frame = +1
Query: 298 DDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASI 477
D +K ++K P D R KT DVT TRG EFE++ LKRELLMGIFE G+E+PSPIQE SI
Sbjct: 16 DRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESI 75
Query: 478 PIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIEL 657
PIALSG+D+LARAKNGTGKT A+ IP LE+VD KK IQ LI+VPTRELALQTSQ+C L
Sbjct: 76 PIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTL 135
Query: 658 AKHTDIRVMVTTGGTNLRDDIMRI 729
KH +++VMVTTGGT LRDDI+R+
Sbjct: 136 GKHMNVKVMVTTGGTTLRDDIIRL 159
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 98.3 bits (234), Expect = 1e-21
Identities = 46/116 (39%), Positives = 73/116 (62%)
Frame = +1
Query: 382 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 561
+ FEE LK +LL GI+ G+E PS +Q +I G+DV+A+A++GTGKT + I +L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 562 EQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRI 729
+ +D QALI+ PTRELA+Q + + L H +++ GGT++ +DI ++
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKL 136
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 97.1 bits (231), Expect = 2e-21
Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 2/167 (1%)
Frame = +1
Query: 220 TENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEF 399
T+N+ +VG ++S +D G K+ +RR K N F+
Sbjct: 25 TDNQKDKHENVGENVSD---------EDDGNYIASKLLESNRRTKGKKGNGKASN-FQSM 74
Query: 400 CLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDP- 576
L + LL IF+KG++ P+PIQ +IP+ L G+DV+ A+ G+GKT A+ IP++E +
Sbjct: 75 GLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKST 134
Query: 577 -KKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRD 714
+ALI+ P RELALQT ++ + +K TD+R + GG +L +
Sbjct: 135 LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEE 181
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 96.7 bits (230), Expect = 3e-21
Identities = 49/123 (39%), Positives = 76/123 (61%), Gaps = 3/123 (2%)
Frame = +1
Query: 352 KTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTG 531
K + T + F+ L R +L G+ G+E P+ IQ+ +IP+AL GKD++ A G+G
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSG 308
Query: 532 KTGAYCIPVLEQV--DPKK-DTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGT 702
KT A+ +P+LE++ PKK T + LI+ PTRELA+Q + ++A TDI V + GG
Sbjct: 309 KTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGL 368
Query: 703 NLR 711
+L+
Sbjct: 369 SLK 371
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 96.7 bits (230), Expect = 3e-21
Identities = 48/111 (43%), Positives = 71/111 (63%)
Frame = +1
Query: 388 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 567
F++ LK ELL GI+ G+E+PS IQ+ +I L +DVLA+A++GTGKT + I VL++
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 568 VDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDI 720
+D QALI+ PTRELA Q ++ + L ++ GGT +RDD+
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDM 131
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 89.8 bits (213), Expect = 3e-19
Identities = 43/112 (38%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Frame = +1
Query: 388 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 567
F +F LK ELL I + G+E PS +Q+ IP ++ G DVL +AK+G GKT + + L+Q
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 568 VDPKKDTIQALIVVPTRELALQTSQICIELAKH-TDIRVMVTTGGTNLRDDI 720
++P + L++ TRELA Q +K+ D+R V GG N++ D+
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDM 164
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 85.8 bits (203), Expect = 6e-18
Identities = 56/169 (33%), Positives = 94/169 (55%), Gaps = 9/169 (5%)
Frame = +1
Query: 199 DKFGKMMTENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDR-RIKTSDV-TD 372
D+ G +TEN + S + + T E + +S L IP K+ R+K +D+ D
Sbjct: 49 DRLGPKITENVDAKSEQ--DKATNTIAEDANTKQSENDESNL-IPNKNEVRVKLADLQAD 105
Query: 373 TRG-----NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG--KDVLARAKNGTG 531
FEE LK ELL GI+ ++KPS IQE ++P+ LS ++++ ++++GTG
Sbjct: 106 PNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTG 165
Query: 532 KTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 678
KT A+ + +L +VD QA+ + P+RELA Q + E+ K+T+++
Sbjct: 166 KTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 83.4 bits (197), Expect = 3e-17
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Frame = +1
Query: 388 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE- 564
F +F L L I + +EKP+ +Q +IP+AL GKD++A+A+ G+GKT AY IP+LE
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 565 -----QVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMR 726
Q+D + I AL++VPTRELA Q + +L + TN D + R
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQR 134
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 77.0 bits (181), Expect = 3e-15
Identities = 45/103 (43%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Frame = +1
Query: 397 FCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDP 576
F L E+L + + G+ KP PIQ IP A G D++ +A G+GKT A+ IP+LE
Sbjct: 127 FSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLR 186
Query: 577 KKDT--IQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGG 699
D +QAL+V PTRELA Q Q + +IRVM TGG
Sbjct: 187 NVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGG 229
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 74.1 bits (174), Expect = 2e-14
Identities = 38/117 (32%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Frame = +1
Query: 370 DTRGNE----FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKT 537
D++ NE F+E + EL + G++ P+PIQ+ +IP+ L+ +DV+ A+ G+GKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 538 GAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNL 708
A+ +PV++++ A+++ PTRELA Q S+ + +R +V GG ++
Sbjct: 98 AAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDM 154
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 73.7 bits (173), Expect = 2e-14
Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Frame = +1
Query: 388 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 567
FEE +L + + G+E P+PIQ+ + P+A+SG+D++ + G+GKT +YC+P +
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 568 VDPKK-----DTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGG 699
++ + D L++ PTRELA+Q Q C + K + IR GG
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGG 232
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 73.7 bits (173), Expect = 2e-14
Identities = 40/108 (37%), Positives = 68/108 (62%), Gaps = 3/108 (2%)
Frame = +1
Query: 385 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 564
+F+E + +L G+ K +++P+PIQ A+ P L+G+DV+ A+ G+GKT A+ IP L+
Sbjct: 168 QFDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ 225
Query: 565 QVD---PKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGG 699
++ K + L+V PTRELA+QT + L + T+++ +V GG
Sbjct: 226 YLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGG 273
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 72.9 bits (171), Expect = 4e-14
Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Frame = +1
Query: 337 KDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 516
K + S +D +F + L + I E G+E + IQ+ SIP L+G+DVL A
Sbjct: 76 KSVNLNASSTSDIE--KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAA 133
Query: 517 KNGTGKTGAYCIPVLEQV-----DPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRV 681
K G+GKT A+ IP +E + P+ T +I+ PTRELALQ + EL K+
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKPRNGT-GVIIISPTRELALQIFGVAKELLKYHHQTF 192
Query: 682 MVTTGGTNLR 711
+ GG N R
Sbjct: 193 GIVIGGANRR 202
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 70.5 bits (165), Expect = 2e-13
Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Frame = +1
Query: 460 IQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK----DTIQALIVVPTRELA 627
IQ+ IP AL G+D+L AK G+GKT A+ +P++E + KK D + AL++ PTRELA
Sbjct: 65 IQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELA 124
Query: 628 LQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRI 729
+QT + +++ + + GG N +++ R+
Sbjct: 125 IQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERL 158
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 69.7 bits (163), Expect = 4e-13
Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Frame = +1
Query: 403 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK 582
L + + I G+EKP+ IQ +IP SG+DV+ AK G+GKT A+ +P+ + ++
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 583 -----DTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDI 720
+ A+I+ PTRELA+Q + C K +IR GG ++D I
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQI 535
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 64.5 bits (150), Expect = 1e-11
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 18/134 (13%)
Frame = +1
Query: 382 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 561
NEF L LL I G+ +P+P+Q+ SIPI SG+D++A A+ G+GKT + P+L
Sbjct: 169 NEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
Query: 562 E----------QVD--------PKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMV 687
VD P+K LI+ PTREL Q + + + +R
Sbjct: 229 SLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCA 288
Query: 688 TTGGTNLRDDIMRI 729
GG ++R I +I
Sbjct: 289 VYGGADIRAQIRQI 302
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 63.3 bits (147), Expect = 3e-11
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Frame = +1
Query: 388 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 567
F+ + + L + +G++K +P+Q +IP+ L KD++ A G+GKT AY +P ++
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 568 V---DPKKDTIQALIVVPTRELALQTSQICIEL 657
V D + + ALIV PTRELA Q + EL
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKEL 95
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 63.3 bits (147), Expect = 3e-11
Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 18/152 (11%)
Frame = +1
Query: 298 DDVGWKSKL--KIPPKDRRIKTSDVT-DTRGNE-------FEEFCLKRELLMGIFEKGWE 447
DDV W+ K + P+D RI D +G++ +EE L E+L + + ++
Sbjct: 211 DDVPWREKPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYK 270
Query: 448 KPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPV---LEQVDPKKDTIQ-----ALI 603
+PS IQ A+IP+ L KD++ A+ G+GKT A+ IP+ + ++ P ++ A++
Sbjct: 271 EPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVV 330
Query: 604 VVPTRELALQTSQICIELAKHTDIRVMVTTGG 699
+ PTRELA Q + A+ R + GG
Sbjct: 331 LAPTRELAQQIQVEGNKFAEPLGFRCVSVVGG 362
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 62.5 bits (145), Expect = 6e-11
Identities = 30/87 (34%), Positives = 51/87 (58%)
Frame = +1
Query: 448 KPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELA 627
+P+ IQE I L G++ + AK G+GKT A+ +P++E+ I ALI+ PTRELA
Sbjct: 29 EPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELA 88
Query: 628 LQTSQICIELAKHTDIRVMVTTGGTNL 708
+Q + L + +++ + GG ++
Sbjct: 89 IQIDEQFAALGANLNLKHALIVGGMDM 115
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 49.6 bits (113), Expect = 4e-07
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Frame = +1
Query: 439 GWEKPSPIQEASI-PIALSGKDVLARAKNGTGKTGAYCIPVLEQV---DPKKDT--IQAL 600
G+EK +P+Q+ + + + ++ + +AK GTGKT A+ + + V P+ ++ I ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 601 IVVPTRELALQTSQICIELAKHTDIRVMVTTGGTN 705
I+ PTRELALQ + +L T IRV GG +
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNS 151
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 47.6 bits (108), Expect = 2e-06
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +1
Query: 460 IQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVD-PKKDTIQALIVVPTRELALQT 636
IQ +IP S +D+LA A G+GKT AY P+L+++ +A+IV PTREL Q
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 637 SQICIELAKHTDIRVM 684
+ +L+ T ++++
Sbjct: 132 YRQAEKLSFGTSLKII 147
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 45.6 bits (103), Expect = 7e-06
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +1
Query: 478 PIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK-DTIQALIVVPTRELALQTSQICIE 654
P+ G DV A G+GKT +Y IP+++ + + ++ +++VPTREL +Q ++
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEY 227
Query: 655 LAKHTDIRVMVTTGGTNLRDDIMRI 729
++V TG +LR + ++
Sbjct: 228 YMSGAGLQVCAWTGQKSLRHETYQL 252
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 41.5 bits (93), Expect = 1e-04
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Frame = +1
Query: 451 PSPIQEASIPIALS--GKDVLARAKNGTGKTGAYCIPVLEQVD--PKK-----DTIQALI 603
P+ IQ +P L+ KD A+ G+GKT AY +P+++++ PK I A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 604 VVPTRELALQTSQICIEL 657
+ PTREL Q + +L
Sbjct: 222 MAPTRELCQQIYNVANKL 239
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 33.1 bits (72), Expect = 0.042
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Frame = +1
Query: 403 LKRELLMGIF-EKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPK 579
L +EL+ ++ + EK Q +I +G V+ +GK+ Y IP+L+ + +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 580 KDTIQALIVVPTRELALQTSQICIELAKH----TDIRVMVTTGGTNL--RDDIMR 726
+ A V PT+ LA + I++ + +IRV G T L R+ I+R
Sbjct: 354 DNQSTAFFVFPTKSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPLESRESIIR 408
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 31.1 bits (67), Expect = 0.17
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 717 IISKVCASCSNHYTNVCVFCQFNTN 643
I+ CA C NH ++C+ CQ NT+
Sbjct: 36 IVVDNCAICRNHIMDLCIECQANTD 60
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.68
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Frame = -3
Query: 695 PVVTITRMSVCFASSIQICDVWSANSLVGTTIKACIVSFLGSTCSKTGIQ*APVLPV-PF 519
P+ ++ + ASS + V SANS T+ + +S + ST + T P+ V
Sbjct: 307 PLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNST-TATSASSTPLTSVNST 365
Query: 518 LALASTSFPLRAI----GIEAS*IGDGFSHPFSKIPINNSRFKQNSSNSLPLVSVTS 360
A +++S PL ++ AS ++ + ++++ N+S+ LP SV+S
Sbjct: 366 TATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS 422
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Frame = +1
Query: 442 WEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYC-----IPVLEQVDPKKDTIQALIV 606
W P P +A+ P+A + +++ + + + YC IPV K D I+ +
Sbjct: 572 WNAPIPYPDANCPMAPTYRNLTSEQEEMYEEVLKYCLELKEIPVASNSSKKTDLIELERL 631
Query: 607 VPTRELALQ 633
TRE L+
Sbjct: 632 WLTRECILR 640
>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 7 VVVEYRVSSPFLNFYLA 57
++VEY++ S FL FYLA
Sbjct: 235 LLVEYKMESGFLRFYLA 251
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 229 RISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDT 375
R+ SS + ++ + E+DK+ D G +KLK PK ++T D+ T
Sbjct: 1315 RVDSSFYTSENLRR---ELDKAFDRSGTAAKLK-HPKKTVVETLDILTT 1359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,154
Number of Sequences: 5004
Number of extensions: 50379
Number of successful extensions: 191
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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