Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4n22
         (730 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    81   5e-17
AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical prot...    25   1.8  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   3.2  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    23   7.3  
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      23   9.7  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    23   9.7  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 80.6 bits (190), Expect = 5e-17
 Identities = 41/118 (34%), Positives = 73/118 (61%), Gaps = 7/118 (5%)
 Frame = +1

Query: 388 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 567
           FE   L+ E++  + +  + KP+PIQ  +IPI L+G+D++A A+ G+GKT A+ +P++  
Sbjct: 176 FERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPMIHH 235

Query: 568 VDPKKDTIQ-------ALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDI 720
           +  K+D+++        +IV PTRELA+Q      + A  T ++V V+ GGT ++  +
Sbjct: 236 LLDKEDSLELRTRNPYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGTAVQHQL 293


>AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical protein
           protein.
          Length = 278

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
 Frame = -3

Query: 563 SKTGIQ*APVLPVPFLALASTSFPLRAIGIEAS*IGDGFSHPFSKIP------INNSRFK 402
           SKT    AP+LPV      S SFP      +     DG + P S IP        +S + 
Sbjct: 39  SKTKNASAPLLPVDRFVGFSISFP------QWGCFRDGIALPVSFIPSIAFPTFRSSWYI 92

Query: 401 QNSSNSLPLVSVTSLVFILL 342
           +   N  PL+  +SL  +LL
Sbjct: 93  KQIGNMSPLMFCSSLAMVLL 112


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 196 RDKFGKMMTENRISSSN 246
           R K G MMTEN+ S+ N
Sbjct: 224 RKKLGSMMTENKASTFN 240


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 449 SHLLFKRPQFLLP*VEKMYLQELRMELVKLVL 544
           +H L  +PQ  LP VE  Y +E + + ++  L
Sbjct: 546 THFLGYQPQMQLPHVEPFYRKEQQQQQLQQTL 577


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 10/55 (18%), Positives = 25/55 (45%)
 Frame = -3

Query: 719 ISSRRFVPPVVTITRMSVCFASSIQICDVWSANSLVGTTIKACIVSFLGSTCSKT 555
           + +RR++ P V    + +      ++ D++S   +     + CI +  G+  + T
Sbjct: 427 VGTRRYMAPEVLSETLDLNLFEGFKMADMYSVGLVFWEMARRCITTVRGAKNTTT 481


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 585 YYTSFNCCTN*RVGTPNITDLY*TGKTHRHSCNGYYRR 698
           YY  + C T     +P++   + TG+ H+ +   YY++
Sbjct: 4   YYCDY-CDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQK 40


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,871
Number of Sequences: 2352
Number of extensions: 12143
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)