Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4n22
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       73   2e-15
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 73.3 bits (172), Expect = 2e-15
 Identities = 37/116 (31%), Positives = 73/116 (62%), Gaps = 9/116 (7%)
 Frame = +1

Query: 388 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 567
           FE   L+  +L  I + G++KP+P+Q+ ++PI ++G+D++A A+ G+GKT A+ +P++  
Sbjct: 198 FEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIINT 257

Query: 568 -VDPKKDTI--------QALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNL 708
            ++   D +        Q +IV PTREL +Q  Q  ++ + ++ ++ +V  GGT++
Sbjct: 258 LLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSV 313


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 574 DQPVPKLEYNKHQFYQFH 521
           +QP P  E  + +F+ FH
Sbjct: 493 EQPTPTTESEERRFFSFH 510


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 442 IPFQKYPSTILASNKT 395
           I FQKY S  L SN+T
Sbjct: 379 ISFQKYMSGTLNSNET 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,143
Number of Sequences: 438
Number of extensions: 3406
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)