Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4n21
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667...    47   1e-05
08_02_1581 - 28004060-28004449,28004730-28004888,28004933-280050...    33   0.25 
08_02_0013 - 11251368-11252867                                         31   0.75 
03_06_0493 + 34315867-34316124,34316194-34316256,34317346-343176...    29   2.3  
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309...    28   5.3  
04_04_0140 - 23073032-23073130,23073270-23073338,23073448-230735...    28   7.0  

>06_03_1314 +
           29266320-29266346,29266463-29266556,29266663-29266712,
           29266798-29266847,29266945-29267053,29267135-29267195,
           29267291-29267343,29267629-29267721,29268091-29268166,
           29268401-29268508,29268596-29268840
          Length = 321

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
 Frame = +3

Query: 24  GDVFDKXVVFEISIKCGNAC--DLVLADGSVDVNGRENEQERLNFDLIMCETQLILICLR 197
           GD+ +     E+ I+  + C  DLV+ DG+ DV G  +  E +   LI+    ++   L+
Sbjct: 100 GDITNARTA-EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLK 158

Query: 198 PGGNCVLKVFDAFEHKTI--QMLNKFVNHFEKWVLYKPPSSRPANSERYLICFN 353
            GG  V K+F   +   +  Q   +    F +    KP SSR ++ E + +C N
Sbjct: 159 VGGKFVAKIFRGKDTSLLYCQCFMQLKLFFSQVTFAKPKSSRNSSIEAFAVCEN 212


>08_02_1581 -
           28004060-28004449,28004730-28004888,28004933-28005044,
           28005160-28005236,28005525-28006076
          Length = 429

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = -2

Query: 397 SNSLT*SLQYGLTNLLKQIK*RSELAGREEGGLY-KTHFSKWLTNLFNI*IVLCSNASKT 221
           ++S +  LQ  +  L KQI+   E AG+E G  + +T ++ W      + I   S+A K 
Sbjct: 351 ADSRSAGLQLRIEELTKQIEQEDEHAGKERGSAHRRTRYACWPLRRLRV-ISASSSARKW 409

Query: 220 FKTQ---LPPGRKQI 185
           F  Q   LPPG + +
Sbjct: 410 FVDQNGRLPPGTEAL 424


>08_02_0013 - 11251368-11252867
          Length = 499

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 282 EKWVLYKPPSSRPANSERYLICFNKLVRPYCNDYVN 389
           E+W L+  PS+RP N ++YL+C+   +  +  D ++
Sbjct: 460 EEWRLH--PSARPCNLDQYLVCYVDRLHSWSGDCIS 493


>03_06_0493 +
           34315867-34316124,34316194-34316256,34317346-34317604,
           34317710-34317819
          Length = 229

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 192 LRPGGNCVLKVFDAFEHKTIQMLNKFVNH-FEKWVLYKPPSSRPANSERYLIC 347
           LR GG+ V+K     E++ I    KF    F+K  L +P ++R ++ E +++C
Sbjct: 176 LRRGGSLVIKFL---ENEDIPGFGKFCKEKFKKVSLLRPKATRSSSREIFMVC 225


>03_04_0151 -
           17729023-17729372,17729441-17730623,17730723-17730953,
           17730975-17731036,17732085-17732157,17737044-17737834,
           17737932-17738004
          Length = 920

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +3

Query: 39  KXVVFEISIKCGNACDLVLADGSVDVNGRENEQE---RLNFDLIMCETQLILICL 194
           K  V +++I+C    D+V+  G V  N  E E+E   R+ F+    E+ ++++ L
Sbjct: 335 KSAVVKVNIECQVRGDVVIECGHVGENTDEEEEEAMFRIMFNTCFLESNMMVLTL 389


>04_04_0140 -
           23073032-23073130,23073270-23073338,23073448-23073539,
           23073637-23074550,23074646-23074779,23075003-23075058,
           23077556-23077646
          Length = 484

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 486 SQRLQIRHHSTWICSFTMSTIILSKM 563
           S+  Q+ H S WIC F  S  +LS++
Sbjct: 181 SRAPQLHHQSYWICIFGASQFLLSQL 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,272,961
Number of Sequences: 37544
Number of extensions: 256472
Number of successful extensions: 596
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)