Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4n18
         (274 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DGH7 Cluster: Putative uncharacterized protein; n=1; ...    33   1.2  
UniRef50_A0X4W8 Cluster: TonB-dependent receptor precursor; n=1;...    31   3.8  
UniRef50_Q6CWF0 Cluster: Similarities with sp|Q03631 Saccharomyc...    31   5.0  
UniRef50_Q21LI6 Cluster: Cytochrome c biogenesis protein, transm...    31   6.6  
UniRef50_Q7UR67 Cluster: Putative uncharacterized protein; n=1; ...    30   8.7  

>UniRef50_A2DGH7 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 230

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = +3

Query: 96  LKTLAFNFSIIIMP*KKTNIIGTLGYVLALSDIIG 200
           LKT A  F+II++P K  +I+ +L +VL  + IIG
Sbjct: 105 LKTYASYFNIILLPKKPEDIVSSLRFVLVENSIIG 139


>UniRef50_A0X4W8 Cluster: TonB-dependent receptor precursor; n=1;
           Shewanella pealeana ATCC 700345|Rep: TonB-dependent
           receptor precursor - Shewanella pealeana ATCC 700345
          Length = 948

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 156 IGTLGYVLALSDIIGFRRWEGV 221
           +G  GYV+ LSD IG R WEG+
Sbjct: 765 LGQSGYVVNLSDNIGGRSWEGI 786


>UniRef50_Q6CWF0 Cluster: Similarities with sp|Q03631 Saccharomyces
           cerevisiae YML076c singleton; n=1; Kluyveromyces
           lactis|Rep: Similarities with sp|Q03631 Saccharomyces
           cerevisiae YML076c singleton - Kluyveromyces lactis
           (Yeast) (Candida sphaerica)
          Length = 919

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 93  RYHHPAYFCCEAVMRFGLKGRIAVVTILDT 4
           RYH+  Y CC A+  F L G   ++ ++D+
Sbjct: 557 RYHYFNYICCSAIRDFDLNGNNRLMDMMDS 586


>UniRef50_Q21LI6 Cluster: Cytochrome c biogenesis protein,
           transmembrane region; n=1; Saccharophagus degradans
           2-40|Rep: Cytochrome c biogenesis protein, transmembrane
           region - Saccharophagus degradans (strain 2-40 / ATCC
           43961 / DSM 17024)
          Length = 628

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 18  LQRLSYPSNRNALLLHSRNRQGGGTYLKTLAFNF--SIIIMP*KKTNIIGTLGYV 176
           L  L  PS     L +  N+Q GGTY+ TL      ++I+ P     + G L Y+
Sbjct: 294 LYELQLPSGIQNKLNNLNNKQQGGTYIGTLIMGILSALIVSPCVSAPLAGALVYI 348


>UniRef50_Q7UR67 Cluster: Putative uncharacterized protein; n=1;
           Pirellula sp.|Rep: Putative uncharacterized protein -
           Rhodopirellula baltica
          Length = 447

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 81  GGGTYLKTLAFNFSIIIMP*KKTNIIGTLGYVLALSDIIGFRRWEGV 221
           G G Y+  +AF+ ++           GT+GY++ L+D +G+  + GV
Sbjct: 347 GFGMYIPYVAFHTTVFERMIAALRETGTIGYLMYLADALGYLGYVGV 393


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,672,300
Number of Sequences: 1657284
Number of extensions: 4063771
Number of successful extensions: 8278
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8278
length of database: 575,637,011
effective HSP length: 68
effective length of database: 462,941,699
effective search space used: 10184717378
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)