Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4n18
         (274 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   1.5  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   1.5  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    24   3.4  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    24   3.4  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    23   5.9  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    23   7.8  

>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 209 MGRRSNYVINESQKLLMISKKK 274
           +G  SNY++N+S   +M+++KK
Sbjct: 550 LGSFSNYLVNKSSVPVMVARKK 571


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 27  LSYPSNRNALLLHSRNRQGGGTYLKTLAFNFSIIIMP*KKTNII 158
           LS+ S +N+L LH+    GG    +T+ ++   ++M     NI+
Sbjct: 116 LSHDSLQNSLALHTIANIGGRELCETVYYDIYKLLMSASNENIV 159


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 235 NYIVRTPSHLRNPMISDNARTYPNVPIMLVFF*GIIMMLKL 113
           NY V   S      + D A+ Y  VP+ L+F   I+ ++ L
Sbjct: 333 NYFVHAKSEEEVLTVPDVAKNYLLVPMKLLFTEPIVFLITL 373


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 235 NYIVRTPSHLRNPMISDNARTYPNVPIMLVFF*GIIMMLKL 113
           NY V   S      +SD A+ Y  VP+ L+F   I  ++ L
Sbjct: 334 NYFVHAKSEEEVLTLSDIAKNYLLVPMKLLFTEPICFLITL 374


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 170 SQRSNNVSFFLRHYNDAKVKS*SFQVGTTTLPISAVK 60
           S  S+N +FFLRH+    V   SF  G     +S V+
Sbjct: 25  SSGSSNGNFFLRHWKLLSVIG-SFTAGVAIYDMSDVR 60


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 220 TPSHLRNPMISDNARTYPNVPI 155
           T  ++  P+ ++  ++YPN+PI
Sbjct: 308 TRQYVGRPVTNETRQSYPNLPI 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,104,779
Number of Sequences: 5004
Number of extensions: 18464
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)