Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4n18
         (274 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81064-1|CAB02962.2|  655|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical ...    26   4.2  
AF003383-1|AAB54234.1|  379|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z35719-2|CAA84799.2|  715|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z81064-1|CAB02962.2|  655|Caenorhabditis elegans Hypothetical
           protein F16B12.1 protein.
          Length = 655

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 232 YIVRTPSHLRNPMISDNARTYPNVPIMLVFF*GIIMMLKLKAK 104
           +I  T  +LR+    DN+ TY  + + LVF   I++++ +  K
Sbjct: 591 HITATAHYLRDLYDGDNSLTYALIALALVFIIAILLVIYVYEK 633


>AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical
           protein Y75B8A.8 protein.
          Length = 715

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 241 FINYIVRTPSHLRNPMISDNARTYPNVPIMLVF 143
           FI   +++PS L NP+     RTYP  P  + F
Sbjct: 583 FIIVCIKSPSLLVNPLRISLPRTYPIDPATVQF 615


>AF003383-1|AAB54234.1|  379|Caenorhabditis elegans Hypothetical
           protein ZC250.2 protein.
          Length = 379

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 90  YHHPAYFCC 64
           +HHP YFCC
Sbjct: 122 HHHPDYFCC 130


>Z35719-2|CAA84799.2|  715|Caenorhabditis elegans Hypothetical
           protein F17C8.3 protein.
          Length = 715

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 60  LHSRNRQGGGTYLKTLAFNFSIIIMP*KKTNI-IGTLGY 173
           LH+R   G  TYL +  F  S  ++  K T + +G +GY
Sbjct: 417 LHNRATLGLTTYLVSYRFPCSFFLIELKMTKLRVGFIGY 455


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +2

Query: 128 YNALKKN*HYWNVGICSSIIGYHWIPKMGRRSNYVINE 241
           Y  L+ N H++ +     I+   W+  +GR    V+++
Sbjct: 16  YRGLEDNRHFYRIPKRPLILRQRWLTAIGRTEETVVSQ 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,945,436
Number of Sequences: 27780
Number of extensions: 97447
Number of successful extensions: 210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)