Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4n18
         (274 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   2.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   3.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   3.7  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 105 KFSGRYHHPAYFCCEAVMRFGLKGRIAVV 19
           +FSG Y  PA+    +  R+ L G +A V
Sbjct: 436 RFSGEYEIPAHGLPPSATRYDL-GAVATV 463


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 18  LQRLSYPSNRNALL 59
           LQR  YP+NR+  +
Sbjct: 126 LQRAEYPTNRSLFI 139


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 164 VGICSSIIGYHWIPKMGRRSNYVIN 238
           +GI +      +I K G  +NY+IN
Sbjct: 480 IGIVNQFHILQFITKNGTSNNYLIN 504


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,376
Number of Sequences: 438
Number of extensions: 1418
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)