Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4n11
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 32 0.54
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 32 0.54
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 0.71
03_02_0253 - 6839543-6839623,6839725-6839805,6839935-6839976,684... 31 0.71
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.71
11_06_0610 - 25449085-25453284 30 2.2
02_04_0452 + 23044190-23045227 29 2.9
04_01_0041 - 464695-464850,467485-469029 29 5.0
01_05_0227 - 19512866-19514983 29 5.0
12_02_0329 + 17585046-17585561 28 6.6
01_05_0789 + 25231013-25231570,25231684-25231761,25232590-252326... 28 6.6
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 28 8.7
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 28 8.7
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 28 8.7
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 31.9 bits (69), Expect = 0.54
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 528 PPSPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPP*SSEAPSAY 698
P SP+ S TS + S ++PT+P TS S +P +P +P P + +PS
Sbjct: 1699 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHA 1758
Query: 699 LTPSS 713
+PSS
Sbjct: 1759 YSPSS 1763
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 31.9 bits (69), Expect = 0.54
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 522 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINPLTP 635
I PPSPA + S+R S +PR F TP T T+ S +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 31.5 bits (68), Expect = 0.71
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +3
Query: 528 PPSPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPP*SSEAPSA- 695
P SP+ S TS + S ++PT+P TS + +P +P +PG P S +PS+
Sbjct: 1747 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSP 1806
Query: 696 YLTPSSL 716
PSS+
Sbjct: 1807 SYNPSSV 1813
>03_02_0253 -
6839543-6839623,6839725-6839805,6839935-6839976,
6840604-6840695,6840789-6840858,6841645-6841737,
6841926-6842002,6842614-6842800
Length = 240
Score = 31.5 bits (68), Expect = 0.71
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Frame = +2
Query: 437 TADVTVEGGNVL----ATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPRL 604
TAD V V+ +TP +R I G + H AT+ L N +KS +
Sbjct: 116 TADQVVVHDGVIREKPSTPEEARKFIKGYSESHAATIGSVL-VTN--VKSGARKEGWDKA 172
Query: 605 NIHFHQSPDAVLEG-IRAGVKASVVIRGSISVSHPLVT 715
++FH+ PD V+E I G + G + V HPL +
Sbjct: 173 EVYFHKIPDEVVESLIEEG--DVFYVAGGLLVEHPLTS 208
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.71
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 540 AISATSTRSSNPRFHTPTTP 599
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 528 PPSPAISATSTRSSNPRFHTPTTPDLTSIS-INPLTPY*KEFAP 656
PP+P A+S P HTP+ P+ T S +P TP K +P
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP 661
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 475 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 597
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 239 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 415
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 416 TVD 424
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 456 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 364
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>12_02_0329 + 17585046-17585561
Length = 171
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -1
Query: 559 VDVAEIAGEGGLMHKGETANSNARG*RGGQHIASFNCDVSSSPTKVNCDGYLEARGG 389
V VA+ +G+G K TA S G GG+ A++ C + C G+ +GG
Sbjct: 91 VIVADASGDGSAAPKSGTAGSTHPGPEGGRSAAAWLCRSHNH----RCHGHGGGKGG 143
>01_05_0789 +
25231013-25231570,25231684-25231761,25232590-25232659,
25232743-25232812,25233262-25233469,25233546-25233716
Length = 384
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = -1
Query: 556 DVAEIAGEGG-LMHKGETANSNARG*RGGQHIASFNCDVSSSPTKVNC-DGYLEARGGRE 383
DV ++ GEG L++ G+TA ++R + + ++ ++ D + RGG E
Sbjct: 161 DVLDLVGEGARLLYVGKTAGYHSRTQEEIHELLLSFAEAGANVVRLKGGDPLVFGRGGEE 220
Query: 382 NDSLKIDKIRVAV 344
D L+ IRV V
Sbjct: 221 MDFLQQQGIRVEV 233
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = -1
Query: 682 SDDYGGFNPGANSF*YGVRGLMEMDVKSGVVGVWNRGFDDRVDVAEIAGEGGLMHKG 512
S D+G F+ S GL +D SGV G W +R A + EG L G
Sbjct: 812 SKDFGAFDSSLGSL--SGEGLGFVDNNSGVYGGWRESVPNRSGSAPPSMEGSLAALG 866
>06_01_0018 +
194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 531 PSPAISATSTRSSNPRFHTPTTPDLT 608
PSP +A TRSS+ R H TP T
Sbjct: 9 PSPTSTARETRSSSARGHASPTPTPT 34
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 531 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAP 656
P+P ++A S+R NP PD+T+ ++ + Y + +P
Sbjct: 447 PAPVMAAFSSRGPNPITPQILKPDITAPGVSVIAAYSEAVSP 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,760,963
Number of Sequences: 37544
Number of extensions: 430591
Number of successful extensions: 1527
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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