Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4n11
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    30   1.5  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   2.6  
Z70213-6|CAA94176.1|  167|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    29   4.5  
AC024751-12|ABF71717.1|  301|Caenorhabditis elegans Collagen pro...    28   5.9  
Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 514 PYASSHPPLRSRLHQPDHQIPDS 582
           P +S HPPL S  H  +H  PD+
Sbjct: 66  PTSSHHPPLNSSSHHSNHNYPDT 88


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 531 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP--Y*KEFAPGLKPP*SSEAPSAYLT 704
           P+P  + T+T  +NP   TPTT  + +I  +P  P          + P  S+ AP+A + 
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVN 547

Query: 705 PSS 713
           P+S
Sbjct: 548 PTS 550


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 531 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPP*SSEAPSAYLTPS 710
           P+P  + T+T  +NP   TPTT   TS   N ++P+       +     + AP    +P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548

Query: 711 S 713
           +
Sbjct: 549 T 549


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 352
           F  L F++TG E KS  V + S+    +I  GYR+
Sbjct: 37  FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71


>Z70213-6|CAA94176.1|  167|Caenorhabditis elegans Hypothetical
           protein ZK930.7 protein.
          Length = 167

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 525 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLT 632
           KPP+P+     T   N   + P++P  T  S  PLT
Sbjct: 101 KPPAPSARTPPTIYENLAINAPSSPSATDASSVPLT 136


>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
           protein C08H9.2 protein.
          Length = 1220

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 495 MREDEGVASTLPPSTVTSAVVQQRSTVTGILRLGAE 388
           + ++ GV   +PP  VT+ V+       G+LR+ AE
Sbjct: 233 LTQNNGVKINIPPPHVTNEVISVTGEKDGVLRVAAE 268


>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 522 IKPPSPAISATSTRSSNPRFHTPTTPD-LTSISINPLTP 635
           +   SPAI +T+T +++P+  T  TP+ +T++    + P
Sbjct: 266 VSSDSPAIESTTTTTASPKTSTTLTPEPITTVPAKDVKP 304


>AC024751-12|ABF71717.1|  301|Caenorhabditis elegans Collagen
           protein 47 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -1

Query: 634 GVRGLMEMDVKSGVVGVWNRGFDDRVDVAEIAGEGGLMHKGETANSNARG*RGG 473
           G  GL   D   G  G    G  D V +  + G+ G   +GE  N  ++G RGG
Sbjct: 167 GPPGLAGQDGLDGAPGEPGVGGMDAVKIVSVDGKIG--RRGEAGNKGSKGSRGG 218


>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +2

Query: 431 WTTADVTVEGGNVL-ATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPRLN 607
           W T D      +   A P  SR T+   AL H A      GY  P ++  +   +  RL+
Sbjct: 24  WKTEDAPRRNNHPAPAPPKPSRPTVDASALQHAAARLRKTGYNEP-VRGDVENLSDGRLD 82

Query: 608 IHFHQSPD 631
               Q PD
Sbjct: 83  RPHQQLPD 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,417,462
Number of Sequences: 27780
Number of extensions: 315303
Number of successful extensions: 1259
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)