Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4n08
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    31   0.17 
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    28   1.6  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    27   2.7  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    26   4.8  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   6.3  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   6.3  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.3  

>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +1

Query: 400 LTLKNSFLACPTLPNTVKIYIVPLEEHSNVHFDSNVSQEIL-VENNNSSIDETITRHHI 573
           LT+ N       +P ++ +    L   + VH++S V QE+L +++NNSS+D   TR  +
Sbjct: 353 LTISNVNRYLNIVPGSLDLQF-SLTNENFVHWNSTVYQELLNLKSNNSSVDGVKTRRQL 410


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 182 VFQFSC-PSGIDVLQFL-SILA*NNASSXLKYFLIKNANTNXKCYEN 48
           + Q  C P+G D+L FL  ++A +NA   L+ FL +  N N K   N
Sbjct: 282 LLQNECIPAGTDLLSFLHKLIASSNAPKSLEIFL-QELNNNTKSNSN 327


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 583 TQTPNILRLFSTEPLLADDETVQYYTGLKTASKFS 687
           T TPN+    +T   L  DET +  TG+ T+SK S
Sbjct: 118 TSTPNVTVTEATVNELLRDETGEVITGVVTSSKKS 152


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
 Frame = +1

Query: 406 LKNSFLACPT-LPNTVKIYIVPLEEHS--NVHFDSNVSQEILVENNNSSIDETITRH 567
           +++S +  P+ L + VK+    + + S  NV F  +V  ++L+ +N+ SID  I RH
Sbjct: 356 IRDSMIGLPSNLSDYVKLNFSSVTKSSSNNVEFLDDV-YDMLLGSNSDSIDSRINRH 411


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 433  TLPNTVKIYIVPLEEHSNVHFDSNVSQEILVENNNSSI 546
            T  N+ +I  V   E  ++HFD NVS + +   N S I
Sbjct: 975  TTENSSEIVQVIHTEDDSLHFDDNVSTDSVSLGNKSRI 1012


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -2

Query: 530 FSTRIS*ETFESKCTLLCSSRGTMYIFTVLGSVG 429
           ++ ++    F+SKCT+ C  +  ++I  + G++G
Sbjct: 249 YTQKVQSSEFQSKCTVCCYDK-DLWICLICGNIG 281


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 386 LLSTFCFFRNW 354
           L+ TFCFFR W
Sbjct: 32  LVETFCFFRRW 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,260
Number of Sequences: 5004
Number of extensions: 61500
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)