Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4n08
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    31   0.63 
AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z81585-3|CAB04686.1|  261|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z77659-8|CAB01170.1|  958|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z77657-11|CAB01153.1|  958|Caenorhabditis elegans Hypothetical p...    28   7.8  
AF295093-1|AAG03081.1|  958|Caenorhabditis elegans bimC kinesin ...    28   7.8  
AB024428-1|BAC19818.1|  958|Caenorhabditis elegans kinesin like ...    28   7.8  

>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
           protein F26C11.3 protein.
          Length = 1317

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 493 NAHCCVLQGVLCISSQY--WEVLGRLKSCFLRLKVCNLCCLLFVSSETG 353
           N  CC L+   C+S QY  W  +  +K     L+ C+ C L   S+ETG
Sbjct: 124 NTSCCNLKVTECLSKQYEDWRNVTLIKGYERELEKCD-CVLTSSSTETG 171


>AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical
           protein Y41G9A.4b protein.
          Length = 860

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +1

Query: 373 KVDNKGYKLLTLKNSFLACPTLPNTVKIYIVP--LEEHSNVHFDSNVSQEILVENNNSSI 546
           KVD K Y +L  +N  L         KI+     LEE +      +++ ++L EN+    
Sbjct: 752 KVDQKRYDMLKKENETLQIQIEEKERKIHECKERLEELTKNSETEDMNAQLLCENDKQIA 811

Query: 547 DETITRHHITIGTQTPNILRL 609
           DE +T    T  T T  ++ L
Sbjct: 812 DENLTYSTATTLTTTIPLIDL 832


>Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical
           protein F53H2.1 protein.
          Length = 914

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 110 SSXLKYFLIKNANTNXKCYENNAQQRH--FDSCQPHC 6
           S  +  FL ++ N+N +   NN QQ+   F  C P C
Sbjct: 204 SGHINTFLSQSCNSNQQAENNNFQQKMQCFTICSPQC 240


>Z81585-3|CAB04686.1|  261|Caenorhabditis elegans Hypothetical
           protein T05E12.3 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +3

Query: 195 LFDAXKVLPQKVRGYVGNTLWNLTMKTLVNTQ 290
           +F   ++  Q+++ YVG T +  ++KTL+NT+
Sbjct: 11  IFFIFRLQAQEIKLYVGGTEFTTSIKTLLNTE 42


>Z77659-8|CAB01170.1|  958|Caenorhabditis elegans Hypothetical
           protein F23B12.8 protein.
          Length = 958

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/82 (19%), Positives = 38/82 (46%)
 Frame = +1

Query: 424 ACPTLPNTVKIYIVPLEEHSNVHFDSNVSQEILVENNNSSIDETITRHHITIGTQTPNIL 603
           AC ++ +++K  ++ +E+ S    +++  Q I  +NN  +I +T+      + +   NI+
Sbjct: 685 ACSSMADSMKALMLQVEQLSTKVAENHEKQVIADQNNQETILDTLNTAETVVQSLEDNIV 744

Query: 604 RLFSTEPLLADDETVQYYTGLK 669
                +  + D +     T  K
Sbjct: 745 ETCDVKQEMDDTKKTLKQTDAK 766


>Z77657-11|CAB01153.1|  958|Caenorhabditis elegans Hypothetical
           protein F23B12.8 protein.
          Length = 958

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/82 (19%), Positives = 38/82 (46%)
 Frame = +1

Query: 424 ACPTLPNTVKIYIVPLEEHSNVHFDSNVSQEILVENNNSSIDETITRHHITIGTQTPNIL 603
           AC ++ +++K  ++ +E+ S    +++  Q I  +NN  +I +T+      + +   NI+
Sbjct: 685 ACSSMADSMKALMLQVEQLSTKVAENHEKQVIADQNNQETILDTLNTAETVVQSLEDNIV 744

Query: 604 RLFSTEPLLADDETVQYYTGLK 669
                +  + D +     T  K
Sbjct: 745 ETCDVKQEMDDTKKTLKQTDAK 766


>AF295093-1|AAG03081.1|  958|Caenorhabditis elegans bimC kinesin
           BMK-1 protein.
          Length = 958

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/82 (19%), Positives = 38/82 (46%)
 Frame = +1

Query: 424 ACPTLPNTVKIYIVPLEEHSNVHFDSNVSQEILVENNNSSIDETITRHHITIGTQTPNIL 603
           AC ++ +++K  ++ +E+ S    +++  Q I  +NN  +I +T+      + +   NI+
Sbjct: 685 ACSSMADSMKALMLQVEQLSTKVAENHEKQVIADQNNQETILDTLNTAETVVQSLEDNIV 744

Query: 604 RLFSTEPLLADDETVQYYTGLK 669
                +  + D +     T  K
Sbjct: 745 ETCDVKQEMDDTKKTLKQTDAK 766


>AB024428-1|BAC19818.1|  958|Caenorhabditis elegans kinesin like
           protein KLP-14 protein.
          Length = 958

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/82 (19%), Positives = 38/82 (46%)
 Frame = +1

Query: 424 ACPTLPNTVKIYIVPLEEHSNVHFDSNVSQEILVENNNSSIDETITRHHITIGTQTPNIL 603
           AC ++ +++K  ++ +E+ S    +++  Q I  +NN  +I +T+      + +   NI+
Sbjct: 685 ACSSMADSMKALMLQVEQLSTKVAENHEKQVIADQNNQETILDTLNTAETVVQSLEDNIV 744

Query: 604 RLFSTEPLLADDETVQYYTGLK 669
                +  + D +     T  K
Sbjct: 745 ETCDVKQEMDDTKKTLKQTDAK 766


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,276,756
Number of Sequences: 27780
Number of extensions: 343117
Number of successful extensions: 980
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)