Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4n06
         (206 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q65328 Cluster: Spheroidin-like protein precursor; n=26...    43   0.002
UniRef50_O55583 Cluster: GP37; n=2; Leucania separata nuclear po...    35   0.32 
UniRef50_Q0N444 Cluster: GP37; n=3; Nucleopolyhedrovirus|Rep: GP...    34   0.55 
UniRef50_Q9PYT6 Cluster: ORF107; n=1; Xestia c-nigrum granulovir...    31   5.1  
UniRef50_A0IJB5 Cluster: Chitin-binding, domain 3 precursor; n=1...    30   9.0  

>UniRef50_Q65328 Cluster: Spheroidin-like protein precursor; n=26;
           Nucleopolyhedrovirus|Rep: Spheroidin-like protein
           precursor - Orgyia pseudotsugata multicapsid
           polyhedrosis virus (OpMNPV)
          Length = 321

 Score = 42.7 bits (96), Expect = 0.002
 Identities = 17/22 (77%), Positives = 18/22 (81%)
 Frame = +1

Query: 133 PAVRSHGYLSLPTARQYKCFKE 198
           PAVR HGYLS P ARQYKCF +
Sbjct: 14  PAVRPHGYLSTPVARQYKCFAD 35


>UniRef50_O55583 Cluster: GP37; n=2; Leucania separata nuclear
           polyhedrosis virus|Rep: GP37 - Leucania separata nuclear
           polyhedrosis virus (LsNPV)
          Length = 303

 Score = 35.1 bits (77), Expect = 0.32
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +1

Query: 139 VRSHGYLSLPTARQYKCF 192
           V SHGYLS P ARQY+C+
Sbjct: 24  VASHGYLSYPVARQYRCY 41


>UniRef50_Q0N444 Cluster: GP37; n=3; Nucleopolyhedrovirus|Rep: GP37
           - Clanis bilineata nucleopolyhedrosis virus
          Length = 286

 Score = 34.3 bits (75), Expect = 0.55
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +1

Query: 145 SHGYLSLPTARQYKCFKE 198
           +HGY+S P ARQYKC+++
Sbjct: 20  AHGYMSWPAARQYKCYRD 37


>UniRef50_Q9PYT6 Cluster: ORF107; n=1; Xestia c-nigrum
           granulovirus|Rep: ORF107 - Xestia c-nigrum granulosis
           virus (XnGV) (Xestia c-nigrumgranulovirus)
          Length = 244

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 139 VRSHGYLSLPTARQYKCF 192
           V+SHG++  P ARQY+C+
Sbjct: 16  VKSHGFMLYPLARQYRCY 33


>UniRef50_A0IJB5 Cluster: Chitin-binding, domain 3 precursor; n=1;
           Serratia proteamaculans 568|Rep: Chitin-binding, domain
           3 precursor - Serratia proteamaculans 568
          Length = 276

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 130 APAVRSHGYLSLPTARQYKCFKE 198
           A A   HG ++ P +RQY+CFKE
Sbjct: 33  ASAQLRHGSVATPISRQYQCFKE 55


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,983,670
Number of Sequences: 1657284
Number of extensions: 1621071
Number of successful extensions: 3463
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3463
length of database: 575,637,011
effective HSP length: 47
effective length of database: 497,744,663
effective search space used: 10452637923
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)