Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4n06
         (206 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747...    28   1.2  
06_01_0284 + 2087710-2088203,2088518-2088727,2089567-2089744           25   8.4  

>01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,
            7472855-7473019,7473689-7474821,7474902-7475426,
            7477077-7477249,7478737-7478831,7478893-7481688
          Length = 1693

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 175  GPSAGTDSRESALPARESQQTMQLIMQS 92
            G   G  S  SA+PA E + T+QL+ QS
Sbjct: 1203 GYENGHGSSRSAMPAEEQRNTLQLLNQS 1230


>06_01_0284 + 2087710-2088203,2088518-2088727,2089567-2089744
          Length = 293

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 195 FKTFILTGRRQGQIAV 148
           FKTF+LTGR +G   V
Sbjct: 201 FKTFLLTGRSEGHHGV 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,814,407
Number of Sequences: 37544
Number of extensions: 41351
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)