Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4n05
         (190 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    23   7.0  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    23   7.0  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    23   7.0  
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    22   9.3  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    22   9.3  
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    22   9.3  
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...    22   9.3  

>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 82  VGYSPIAFREGLHPS 126
           V +SP+A R  LHPS
Sbjct: 152 VYFSPLALRAHLHPS 166


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 47  TSGTKPXPXCARSDTVPLRFARVCIRXPPSWS 142
           +S TKP     RS ++  RFA   ++ P S S
Sbjct: 589 SSPTKPSTTSLRSQSLVNRFASSTLKAPSSSS 620


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 125 DGCRPSRNAMGLYPTW 78
           DGCR   +++  YP W
Sbjct: 168 DGCRQRLDSLLYYPVW 183


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 95  PLRFARVCIRXPPSWSPLGRGCCQ 166
           PL  A   I   PSW+ LG+G  +
Sbjct: 150 PLASAGYPIYFVPSWTSLGQGALE 173


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 14  SCFCGDXFVWXTSGTKP 64
           S FC D FV  T+G +P
Sbjct: 401 SVFCIDRFVSMTTGRRP 417


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 26  GDXFVWXTSGTKPXPXCARS 85
           G+ F W ++ +KP P  A +
Sbjct: 303 GNDFFWESNASKPFPKVAEN 322


>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 75  VPGRIQSHCVSRGSASVXRH 134
           +PG +  H V+ G+ SV ++
Sbjct: 102 LPGELAKHAVTEGTKSVTKY 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,145
Number of Sequences: 5004
Number of extensions: 8490
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)