Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4n05
         (190 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1031 - 23389263-23389541                                         27   2.8  
03_06_0521 + 34493682-34494041                                         26   3.7  
05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017           26   4.9  
03_06_0619 - 35136435-35136728,35137155-35137358,35137476-351376...    25   6.4  
01_01_0510 - 3723983-3724416,3724895-3725766,3725797-3726791,372...    25   6.4  
04_04_0224 - 23738105-23738273,23738364-23738472,23738702-237388...    25   8.5  
02_02_0123 + 7015905-7015928,7015975-7016105,7017675-7017940,701...    25   8.5  

>07_03_1031 - 23389263-23389541
          Length = 92

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 180 LPXCSWQQPRPSGDQDGG 127
           LP CSWQ    S D  GG
Sbjct: 6   LPWCSWQLAAASADNSGG 23


>03_06_0521 + 34493682-34494041
          Length = 119

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 170 VAGSNXAPAATKMAADGCRPSRNAMGLYPTWHKXA 66
           VA +  AP+A+  +A   RPSR AM +  T  K A
Sbjct: 10  VAAAGVAPSASSSSAGRRRPSRVAMAVGATRGKPA 44


>05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017
          Length = 824

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 188 VDDSHXVAGSNXAPAATKMAADGCRPSRNAMGLYPTWHKXA 66
           VDD + + GS       + + DG R S  AMG Y   H  A
Sbjct: 680 VDDEYIIVGSANI---NQRSMDGARDSEIAMGAYQPHHLAA 717


>03_06_0619 -
           35136435-35136728,35137155-35137358,35137476-35137646,
           35137902-35138050,35138380-35138527,35138614-35138682,
           35138767-35139027,35139223-35139417,35139772-35139888,
           35140026-35140961
          Length = 847

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 188 VDDSHXVAGSNXAPAATKMAADGCRPSRNAMGLYPTWHK 72
           VDD + + GS       + + +GCR +  AMG Y   +K
Sbjct: 702 VDDEYVIIGSANI---NQRSMEGCRDTEIAMGAYQPHYK 737


>01_01_0510 -
           3723983-3724416,3724895-3725766,3725797-3726791,
           3727332-3727439
          Length = 802

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 188 VDDSHXVAGSNXAPAATKMAADGCRPSRNAMGLYPTWH 75
           VDD + + GS       + + DG R S  AMG Y  +H
Sbjct: 659 VDDEYIIIGSANI---NQRSMDGARDSEIAMGGYQPYH 693


>04_04_0224 -
           23738105-23738273,23738364-23738472,23738702-23738804,
           23738895-23738926,23739342-23739592,23739639-23739754,
           23740271-23740526,23740760-23740847,23740985-23741062,
           23741238-23741313,23741532-23741590,23742639-23742711
          Length = 469

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = -2

Query: 168 SWQQPRPSGDQDGGXRMQTLAKRNGTVSDLAQXGXGLVPEVXHTNXSPQKXDE 10
           SW +  P+G   GG   + ++  N  +++L   G      + H + SPQ  ++
Sbjct: 63  SWTRILPNGSLSGGINREGISYYNNLINELLLKGVQPFVTLFHWD-SPQALED 114


>02_02_0123 +
           7015905-7015928,7015975-7016105,7017675-7017940,
           7018239-7018327,7018716-7018811,7018874-7018969,
           7019121-7019251,7020123-7020177,7020645-7020800,
           7021238-7021306,7021392-7021499,7022128-7022196,
           7022743-7022797,7023031-7023227
          Length = 513

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +3

Query: 48  PPELNQXXF---VPGR--IQSHCVSRGSASVXRHLGRRWGXVAASYXM 176
           PP L +  F   +P R  ++S   SRG A+   HL RR   + A + M
Sbjct: 97  PPLLRRIIFCRYLPSRCLLRSSRTSRGLAAADLHLARRGEQIRAGWRM 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,326,164
Number of Sequences: 37544
Number of extensions: 82673
Number of successful extensions: 242
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)