Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4n05
         (190 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067940-6|AAC19205.1|  223|Caenorhabditis elegans Hypothetical ...    27   2.4  
AL110485-23|CAB60377.3|  770|Caenorhabditis elegans Hypothetical...    26   3.2  
AL032623-8|CAA21514.1|  123|Caenorhabditis elegans Hypothetical ...    25   5.6  
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.       25   9.9  
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei...    25   9.9  
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :...    25   9.9  

>AF067940-6|AAC19205.1|  223|Caenorhabditis elegans Hypothetical
           protein F36F12.6 protein.
          Length = 223

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 171 CSWQQPRPSGDQ 136
           C+WQ PRPS D+
Sbjct: 199 CTWQDPRPSSDK 210


>AL110485-23|CAB60377.3|  770|Caenorhabditis elegans Hypothetical
           protein Y46G5A.29 protein.
          Length = 770

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 3   LIIHXVSVVTXLCGVPPELNQXXFVPGRIQS---HCVSRGSASVXRHLGRRWGXVAASYX 173
           +I+  +S++T    +  +L+   F  G  ++   HC SR S  + RHL  R       + 
Sbjct: 2   IILSILSLLTFDLVIGSDLDANHFFKGLYETSGFHCYSRDSMRLPRHLHGRPQTTDPPFD 61

Query: 174 MGVID 188
           + V D
Sbjct: 62  LSVFD 66


>AL032623-8|CAA21514.1|  123|Caenorhabditis elegans Hypothetical
           protein Y43F8B.7 protein.
          Length = 123

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 14  SCFCGDXFVWXTSGTKPXPXC 76
           S  CGD   W  SGT   P C
Sbjct: 40  SICCGDFQFWKLSGTPSSPTC 60


>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
          Length = 1475

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 3    LIIHXVSVVTXLCGVPPELNQXXFVP 80
            L+I   S++  +C + PELN   FVP
Sbjct: 1040 LLITAFSILAIICSIVPELN-IFFVP 1064


>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
            protein.
          Length = 1475

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 3    LIIHXVSVVTXLCGVPPELNQXXFVP 80
            L+I   S++  +C + PELN   FVP
Sbjct: 1040 LLITAFSILAIICSIVPELN-IFFVP 1064


>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
            animals transformedinto males protein 2, isoform a
            protein.
          Length = 1475

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 3    LIIHXVSVVTXLCGVPPELNQXXFVP 80
            L+I   S++  +C + PELN   FVP
Sbjct: 1040 LLITAFSILAIICSIVPELN-IFFVP 1064


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,017,824
Number of Sequences: 27780
Number of extensions: 56147
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)